Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I11
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.075
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.17 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.075
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 319  QQNQGYPQSTAQYPTQGVPYPTHQNQGYPQSTAQ 420
            QQ Q  PQ  +Q P Q  P P  Q Q   Q   Q
Sbjct: 1511 QQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQ 1544



 Score = 27.1 bits (57), Expect = 0.23
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 388  QNQGYPQSTAQYPTQGVPYPNHQSQGYPQSTAQ 486
            Q Q  PQ  +Q P Q  P P  Q Q   Q   Q
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQ 1544


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = +1

Query: 319 QQNQGYPQSTAQYPTQGVPYPTHQNQGYPQSTAQYPTQGVPYPNHQSQGYP 471
           QQ Q      +Q P+ G P P    Q  P  + Q P +G P PN  SQG P
Sbjct: 3   QQKQPIITQQSQQPSSGAPGP----QPSPHQSPQAPQRGSP-PN-PSQGPP 47



 Score = 27.5 bits (58), Expect = 0.17
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 160 QFPPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLP 282
           Q PPN G + ++P S S  ++   SPA      P  G P+P
Sbjct: 379 QPPPNFGVSQVSPVSMSALVSAVRSPA-GGQLPPSAGAPMP 418



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +1

Query: 382 THQNQGYPQSTAQYPTQGVPYPN---HQSQGYPQ-STAQYPTQG 501
           T Q Q      +Q P+ G P P    HQS   PQ  +   P+QG
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQG 45


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +1

Query: 337  PQSTAQYPTQGVPYPTHQNQGYPQSTAQYPTQGVPYPNHQSQGYPQSTAQY---PTQG 501
            P    Q+ T   P+P + + G       +PT    +    SQ  P+   +Y   P+QG
Sbjct: 1739 PSKAMQFQT--FPHPGNGHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQG 1794


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 252 SSTRTGLSTTCSICLSSA---RLSYSAESRLSTKYCSIPDTGCSIPYSPESRLSTKY 413
           SSTRT  + T   C  S+   ++     + L T    I D+ C I   P+ R  T+Y
Sbjct: 241 SSTRTAETGTIRKCDESSPHDQVIIGGSNGLDTSKVHIIDSICGIDSKPDYRELTEY 297


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 432 LCRVLSSTLWIA 397
           +CRVL +T+W+A
Sbjct: 84  VCRVLHTTVWVA 95



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 366 LCRVLSSTLWIA 331
           +CRVL +T+W+A
Sbjct: 84  VCRVLHTTVWVA 95


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/56 (23%), Positives = 22/56 (39%)
 Frame = +1

Query: 313 PIQQNQGYPQSTAQYPTQGVPYPTHQNQGYPQSTAQYPTQGVPYPNHQSQGYPQST 480
           P+ ++Q + Q   Q+P        HQ+Q   Q    +    +     QSQ   Q +
Sbjct: 162 PLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS 217


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 343 STAQYPTQGVPYPTHQNQGYPQSTAQYPTQGV 438
           S AQ+ T   P P     G P S  Q  T  V
Sbjct: 386 SGAQFATPCTPSPPRGPGGVPTSVIQAATSSV 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,948
Number of Sequences: 438
Number of extensions: 5457
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)