Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_I08
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 28 1.4
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 28 1.9
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 27 3.3
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 3.3
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 26 5.8
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 5.8
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 5.8
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 5.8
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 26 7.7
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 7.7
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 317 LNKCSEL-FQNVKKEKCQDSTTDMGRGVICFGAFC*KHIFFAWH 445
LN C EL F+NVKK D+ + CF + K +F+ H
Sbjct: 362 LNVCEELEFKNVKKSGYMQPLFDLTMPLGCFDSLETKEMFYLRH 405
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +3
Query: 555 WVPPDSDFYHDTNWYIKTFGTGLRLQNIIFTANDVLHPDVLIEINDITEKISALNVKYEN 734
W+ + H + + T GTG + N F +L+ +++ +S+LN +
Sbjct: 216 WIESFDNKSHSSTCAVATSGTGEHISNTCFACRS---SQLLVSEDNV---VSSLNKLIND 269
Query: 735 QSISLTDLCYKVP 773
L DLC ++P
Sbjct: 270 FHGKLIDLCVRIP 282
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 204 TLFRYVMCCYSLVVYLCLHYKNYLRNHTK*IWREIKSYS 320
TLF ++ S++V L + KN+ N T +W I++Y+
Sbjct: 221 TLFLFI----SMIVILAMSSKNHGFNETSKVWSHIENYT 255
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 334 IVPKCQKRKMSRLHNRYGKGCHLFRCILLKAYFFR 438
I+P+C+K++ S HN Y + HL + FFR
Sbjct: 621 ILPRCEKKRRSVGHNSYKE--HLVLLTASRILFFR 653
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 5.8
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Frame = +3
Query: 492 FVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKTFGT-----GLRLQN-----II 641
F+T + I ++ E+N N P DT +I TFG+ RL I+
Sbjct: 576 FLTFAGIPVVNLAFERNEENPTPMPFLGSCEDTVSWIDTFGSEYWENAARLGKIWSYLIL 635
Query: 642 FTANDVLHP-DVLIEINDITEKISAL 716
F AND + P D+ EIN + E + +
Sbjct: 636 FLANDPVVPYDLEDEINGVGEMLKRI 661
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 726 YENQSISLTDLCYKVPV 776
+EN ++SLT LC+++PV
Sbjct: 879 FENFTLSLTPLCFEMPV 895
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 675 LIEINDITEKISALNVKYENQSISLTDLCYKV 770
+ E D + K+SAL KY +++ +CY++
Sbjct: 461 VFEYKDPSTKLSALIPKYFFSELNIASICYEI 492
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 603 KTFGTGLRLQNIIFTANDVLHPDVLIEINDITEKISALNVKYENQSISLTDLC 761
KTF GL N +T +L I N + + AL Y+N S + DLC
Sbjct: 604 KTFCVGL---NWSYTCEMLLEIVDCINDNGLAQIFLALTQDYKNSSSGIPDLC 653
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 490 NNVPKMTCHGCFATKMPS-EKNMLSTKCTETDDTPS 386
N +P T G +T + S N LS+ CT DDT S
Sbjct: 571 NTLPP-TSQGATSTTVSSASSNFLSSSCTPIDDTNS 605
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 633 NIIFTANDVLHPDVLIEINDITEKISALNVKYENQSIS 746
N+ + ND L+P LI I ++I+ L + E+Q IS
Sbjct: 40 NMFYQGNDFLYPIYLIHGQPIDDEIN-LEIDEESQPIS 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,245
Number of Sequences: 5004
Number of extensions: 73934
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -