Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I08
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    62   4e-10
02_01_0620 + 4650572-4650671,4650755-4650891,4651012-4651205,465...    30   2.7  

>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 1/170 (0%)
 Frame = +3

Query: 201 ITLFRYVMCCYSLVVYLCLHYKNYLRNHTK*IWR-EIKSYSTSAVNCSKMSKKKNVKTPQ 377
           + ++  ++C +    +L    ++ + +HTK +   E K +S++       S + +     
Sbjct: 205 VVVYLVLLCIFLFGAFLHRTRRSGIFSHTKPLKNAEDKIHSSNNGKVPDSSAQVSEAASA 264

Query: 378 QIWEGVSSVSVHFVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLW 557
            +     SV   ++ + F   G FVAKHP  V+F +LL  T+ CIGLIRF +E  P  LW
Sbjct: 265 PVQSAHPSVIQTYMSTFFRKHGTFVAKHPLLVLFVSLLVPTLLCIGLIRFKVEIRPEKLW 324

Query: 558 VPPDSDFYHDTNWYIKTFGTGLRLQNIIFTANDVLHPDVLIEINDITEKI 707
           V   S    +  ++        R++ ++   +     +    +ND   K+
Sbjct: 325 VSSGSRAADEKQYFDSHLAPFYRIEQLVLATSAFGGSEAPTIVNDNNMKL 374


>02_01_0620 +
           4650572-4650671,4650755-4650891,4651012-4651205,
           4651287-4651571,4652111-4652169,4652469-4652540,
           4652817-4652925,4653239-4653980
          Length = 565

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 318 STSAVNCSKMSKKKNVKTPQQIWEGVSSVS-VHFVESIFFSLG-IFVAKHPWQVIFGTLL 491
           +T+ V   + +++K+     +++ G  ++S  H+  S+ F++  +F A   W V+FG  L
Sbjct: 44  TTTFVLAGERTRRKDPLDGLRLYSGGWNISDEHYWASVGFTVAPVFAAAAIWFVVFGVSL 103

Query: 492 FVTVSC 509
           F+   C
Sbjct: 104 FLAGCC 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,649,399
Number of Sequences: 37544
Number of extensions: 417045
Number of successful extensions: 890
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)