Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_I08
(843 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 44 1e-04
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr... 41 0.001
AL132853-3|CAB60438.1| 859|Caenorhabditis elegans Hypothetical ... 41 0.001
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 38 0.012
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 36 0.048
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 33 0.19
Z92830-14|CAB07352.1| 363|Caenorhabditis elegans Hypothetical p... 30 2.4
Z81062-4|CAB02943.2| 231|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z92830-15|CAN86918.1| 366|Caenorhabditis elegans Hypothetical p... 29 4.1
Z82054-4|CAB04842.1| 453|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z82054-1|CAB04840.1| 453|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z81109-18|CAB03255.1| 453|Caenorhabditis elegans Hypothetical p... 28 9.5
AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical... 28 9.5
AF098504-6|ABO52818.1| 300|Caenorhabditis elegans Serpentine re... 28 9.5
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 2 protein.
Length = 1274
Score = 44.4 bits (100), Expect = 1e-04
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Frame = +3
Query: 390 GVSSVSVHFVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPD 569
G ++ V F E + V KHP + L+ C G +FH + ++ D
Sbjct: 309 GKGNLEVQF-EGLCARYANAVIKHPLIFVSLGLIVAAACCSGNFKFHSLTHSVDQVSAAD 367
Query: 570 SDFYHDTNWYIKTFGTGLRLQNIIF----TANDVLHPDVLIEINDITEKISALNVKYENQ 737
+ + +I +FG R++ I T + + + E+ + I L Y N
Sbjct: 368 GETRRNEKKFIHSFGPNHRIEQIFINLPPTTKSMFNMPLFEEMFQLVGNIQNLTACYGNS 427
Query: 738 SISLTDLCYK 767
S+ L D+CYK
Sbjct: 428 SVKLDDICYK 437
>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
protein ZK675.1 protein.
Length = 1405
Score = 41.1 bits (92), Expect = 0.001
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 22/139 (15%)
Frame = +3
Query: 417 VESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNW 596
++ + F+LG V ++ W +I + V C GL HIE + + LWV + N+
Sbjct: 116 IQKLLFALGNTVHRNAWSIILAVSMIFAVCCYGLQYVHIETDIVKLWVAQGGRLDEELNF 175
Query: 597 Y--IKT------------------FGTGLR--LQNIIFTANDVLHPDVLIEINDITEKIS 710
IK G G + +Q + D L L++ +I + I+
Sbjct: 176 LPNIKEAMRNVTGDSGPELPRENGLGGGYQVLIQTPEYEGQDALAAGPLLKHVEIMKHIA 235
Query: 711 ALNVKYENQSISLTDLCYK 767
+ NV SL+D+C+K
Sbjct: 236 SFNVSVHGVDWSLSDICFK 254
>AL132853-3|CAB60438.1| 859|Caenorhabditis elegans Hypothetical
protein Y80D3A.7 protein.
Length = 859
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +3
Query: 408 VHFVESIFFSLGIFVAKHPWQVIFGTLLFVT-VSCIGLIRFH 530
VH ++ F+ +G FV HP + I G LL VT VSC+G +RFH
Sbjct: 10 VH-MQKFFYKVGYFVGTHPRKCI-GVLLLVTLVSCLGFLRFH 49
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 414 FVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDS 572
+++ +FF GIFVAKH + + L +S GL I + L+VP D+
Sbjct: 13 WMQKVFFKYGIFVAKHQFWFLIVPLALTVLSIPGLFYLQINLDLYRLFVPTDA 65
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 1 protein.
Length = 1383
Score = 35.5 bits (78), Expect = 0.048
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Frame = +3
Query: 411 HFVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEK-NPMNLWVPPDSDFYHD 587
+F+E+ +G+ ++P F V + C+ + +H E N +++W P S +
Sbjct: 336 NFMENNARDIGMMAGRNPKSHFFIGCA-VLIFCLPGMIYHKESTNVVDMWSSPRSRARQE 394
Query: 588 TNWYIKTFGTGLRLQNIIFTAN-----------DVLHPDVLIEINDITEKISALNVK-YE 731
+ FG R Q I+ ++ V H D+ E+ DI I ++ + +
Sbjct: 395 EMVFNANFGRPQRYQQIMLLSHRDFQSSGKLYGPVFHKDIFEELFDILNAIKNISTQDSD 454
Query: 732 NQSISLTDLCYK 767
++I+L D+CY+
Sbjct: 455 GRTITLDDVCYR 466
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Frame = +3
Query: 450 VAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKTFGTGLRL 629
+A +P I ++L + V GL+ +E + + P DSD ++T +++ +G +
Sbjct: 14 LAAYPVYSILLSILSILVLSSGLVHIRLEPDIRKAFSPDDSDAGYETRVWLEYYGLDIYP 73
Query: 630 QN--IIFTA----NDVLHPDVLIEINDITEKISA 713
+ IFTA + +L L +I + ++SA
Sbjct: 74 ERAFCIFTAKRENSSILQEGALADIYTVDNRLSA 107
>Z92830-14|CAB07352.1| 363|Caenorhabditis elegans Hypothetical
protein F11A5.5a protein.
Length = 363
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 441 GIFVAKHPWQVIFGTLLF-VTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKT-FG 614
G+F A + + + L + + V I LIR E++PM + PP + + YI + +
Sbjct: 18 GLFFATYSKKAVKSPLFWMILVYSIFLIRAMHEEDPMEVPYPPAQINFRTSRKYISSNYA 77
Query: 615 TGLRLQNIIFTANDVL 662
+ RL N +F VL
Sbjct: 78 SSSRLGNHLFELASVL 93
>Z81062-4|CAB02943.2| 231|Caenorhabditis elegans Hypothetical
protein F15A4.5 protein.
Length = 231
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 564 PDSDFYHDTNWYIKTFGTGLRLQNIIFTANDVLHPDVLIEINDITEKISALNVKYEN 734
PD F + + +IK F + I+ N + DV++ +N++ EK + K E+
Sbjct: 143 PDDFFQNLSENFIKIFIIVASVSIILIIVNWIFRRDVVVVVNNVAEKAKLVEEKIES 199
>Z92830-15|CAN86918.1| 366|Caenorhabditis elegans Hypothetical
protein F11A5.5b protein.
Length = 366
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 474 IFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKT-FGTGLRLQNIIFTA 650
+F +L ++ + LIR E++PM + PP + + YI + + + RL N +F
Sbjct: 33 LFWMILVYSIFTVFLIRAMHEEDPMEVPYPPAQINFRTSRKYISSNYASSSRLGNHLFEL 92
Query: 651 NDVL 662
VL
Sbjct: 93 ASVL 96
>Z82054-4|CAB04842.1| 453|Caenorhabditis elegans Hypothetical
protein R10D12.15 protein.
Length = 453
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 543 PMNLWVPPDSDFYHDTNWYIKTFGTGLRLQNIIFTAND 656
P + W P D + + Y FGT L + N ++TA++
Sbjct: 88 PSSCW-PYSYDAFKIASRYFPEFGTSLNVNNTVYTADE 124
>Z82054-1|CAB04840.1| 453|Caenorhabditis elegans Hypothetical
protein T26F2.1 protein.
Length = 453
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 543 PMNLWVPPDSDFYHDTNWYIKTFGTGLRLQNIIFTAND 656
P + W P D + + Y FGT L + N ++TA++
Sbjct: 88 PSSCW-PYSYDAFKIASRYFPEFGTSLNVNNTVYTADE 124
>Z81109-18|CAB03255.1| 453|Caenorhabditis elegans Hypothetical
protein R10D12.15 protein.
Length = 453
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 543 PMNLWVPPDSDFYHDTNWYIKTFGTGLRLQNIIFTAND 656
P + W P D + + Y FGT L + N ++TA++
Sbjct: 88 PSSCW-PYSYDAFKIASRYFPEFGTSLNVNNTVYTADE 124
>AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical
protein Y53F4B.28 protein.
Length = 860
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 417 VESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVP 563
+E F G FVA+ P+ I L +S G + FH + + +++ P
Sbjct: 4 LERFFDWYGQFVARKPFFFILIPSLLTILSTYGFLSFHTQDDIWDIYAP 52
>AF098504-6|ABO52818.1| 300|Caenorhabditis elegans Serpentine
receptor, class t protein61 protein.
Length = 300
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 672 VLIEINDITEKISALNVKYENQSISLTDLCYKVPVVNFFWL 794
VLI+ IT + LNV + N S L + +NF W+
Sbjct: 245 VLIQATVITVYCTVLNVLWHNYSWMLPQNLWSYTALNFMWI 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,896,990
Number of Sequences: 27780
Number of extensions: 419488
Number of successful extensions: 1158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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