Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I07
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   137   1e-33
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   135   3e-33
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   1.7  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   6.9  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.1  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   9.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.1  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   9.1  

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  137 bits (331), Expect = 1e-33
 Identities = 62/88 (70%), Positives = 72/88 (81%)
 Frame = +3

Query: 72  SSYWVAQASSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGK 251
           +SYWV Q ++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GK
Sbjct: 117 NSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGK 176

Query: 252 GHRYSQTKGGSRRAAWLRRNTLQLRRKR 335
           GHRY+ +    + A WLR NTL LRR R
Sbjct: 177 GHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  135 bits (327), Expect = 3e-33
 Identities = 61/88 (69%), Positives = 72/88 (81%)
 Frame = +3

Query: 72  SSYWVAQASSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGK 251
           +SYWV Q ++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GK
Sbjct: 117 NSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGK 176

Query: 252 GHRYSQTKGGSRRAAWLRRNTLQLRRKR 335
           GHR++ +    + A WLR NTL LRR R
Sbjct: 177 GHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 90   QASSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 194
            ++ S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 213 LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 311
           ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 368 HLLIFVCRWKASGIIKYYC 424
           ++++F+C W   G ++ YC
Sbjct: 649 NIILFLCLWVQGGRVRAYC 667


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 129 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKG-HRYSQTKGG 281
           DPS+  +   PK+N       K   +     +G+  RG G+G +R  + +GG
Sbjct: 329 DPSNGVVDGTPKLNSNTRGSSKRPSVNRSQGSGQRGRG-GRGFYRGGRGRGG 379


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 35  TCWPSLRWSPCVELLLGCT 91
           +C PS R  P +ELLL C+
Sbjct: 595 SCGPSYRLLPKIELLLPCS 613


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 280 AHAGQLGSDATLFNYVAN 333
           A AG +  DAT F YV N
Sbjct: 240 ARAGMIAPDATTFEYVKN 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,308
Number of Sequences: 5004
Number of extensions: 28335
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)