Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I07
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   131   3e-31
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   4.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   4.7  
AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    27   6.2  
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    27   6.2  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  131 bits (317), Expect = 3e-31
 Identities = 59/106 (55%), Positives = 73/106 (68%)
 Frame = +3

Query: 18  QSIAEXXXXXXXXXXXXXSSYWVAQASSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKH 197
           Q++AE             +SYWVA+ S+YK++EV+L+DP HKAIRR+P   WI   VHKH
Sbjct: 99  QAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKH 158

Query: 198 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 335
           RE RGLTSAGR SRGLGKG R+S T+GGS+   W R+NT    RKR
Sbjct: 159 REQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNWKRKNTKVFHRKR 204


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 102 YKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 209
           Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 423 YDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 102 YKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 209
           Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 423 YDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -1

Query: 299 PSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLTMLMYSIHDPVDLRIATNGLV 138
           P CP  +++C ++   LA+TS   +  S           +H  +DL +    ++
Sbjct: 48  PDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDHFRDLHPNIDLILDAGSII 101


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -1

Query: 299 PSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLTMLMYSIHDPVDLRIATNGLV 138
           P CP  +++C ++   LA+TS   +  S           +H  +DL +    ++
Sbjct: 121 PDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDHFRDLHPNIDLILDAGSII 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,716,194
Number of Sequences: 27780
Number of extensions: 165107
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)