Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I05
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    29   0.59 
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    26   3.1  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    26   4.1  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   5.5  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   7.2  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    25   7.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.5  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   9.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   9.5  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
          subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 83 RTFQPVHGSQNQKNNCNLRHWIS 15
          RTF     S N K NC  RHW S
Sbjct: 7  RTFSRALSSSNFKINCGRRHWFS 29


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 480 KESNRGPFYVSVSIKFA*YYKTFVSHKIRRKDLYLTLLCKF 358
           KE +   FY+S   K +  ++ F +HK+   +L +   CKF
Sbjct: 206 KEKSLLQFYLSHPKKLSAVFEVFAAHKVVITNLVVRPSCKF 246


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 205 MLGPKPAFEAMSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAAPSN 71
           +LGP   ++A       P IK    K++ F  ++ GS+G   PS+
Sbjct: 115 VLGPIHVYQAF-----YPLIKKGRSKIIVFTSSLAGSMGAFFPSS 154


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -1

Query: 322 ICCFHLLKSMVDIFPFSLI-SSFV 254
           + CFHL+ + + +FP+++I +SFV
Sbjct: 44  LLCFHLVPNALFLFPWTIITTSFV 67


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -1

Query: 292 VDIFPFSLISSFVIFFPALSTTVEMAAPFMLGPKPAFEAMSW 167
           V  F F LIS+  I+FP         A   L P  A   + W
Sbjct: 186 VGFFIFWLISNVAIWFPVYQIRHLFTAKSFLAPPAAIAFLIW 227


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 81  AAVPNDPNIFPINANSFSPASLMQGMSNIQDM 176
           AAV NDPN F     S + + L+Q  S+   M
Sbjct: 31  AAVLNDPNAFATTWQSINASQLLQIPSSTYSM 62


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 346  RYFF*IKLICCFHLLKSMVDIFPFSLISSFVIFFPALSTTVEMAAPFMLGPKPAF 182
            R F  ++++   +L ++   +F  +LIS F   F A   +  +  PF L  K  F
Sbjct: 1046 RAFKALRVLRLINLTQTSQRMFHDALISGFFKIFSAAVVSATLLIPFALWAKNVF 1100


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 81  AAVPNDPNIFPINANSFSPASLMQGMS--NIQDMASKAGFG-PNMNG 212
           AA P DPN++ +N N     S        N +  A   GF   N+NG
Sbjct: 273 AAFPFDPNVYALNTNDGPVTSTDNNCDQLNTRMQAWNNGFNYSNLNG 319


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 462 PFYVSVSIKFA*Y-YKTFVSHKIRRKDLYLTLL 367
           PFYV   IK     +++  SHK R+K+++ T+L
Sbjct: 676 PFYVHPYIKQGILKFQSKESHKFRKKEVWSTVL 708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,017
Number of Sequences: 5004
Number of extensions: 38014
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)