Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I05
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106...    29   3.2  
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637...    27   7.3  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   9.7  

>04_04_0338 +
           24509698-24510042,24510373-24510490,24510539-24510642,
           24510823-24511491
          Length = 411

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 175 MSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAA 80
           ++W     C+  A   LL F G+M G +G A+
Sbjct: 315 LAWRTAFVCVTTAASTLLPFFGSMVGLIGAAS 346


>01_05_0773 +
           25062364-25062894,25063000-25063244,25063365-25063749,
           25063857-25064282
          Length = 528

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 9   KSTYPMXQVXXXXXXXXXVYGLEGAAVPNDPNIFPINANSFSPASLMQGMS 161
           + TY   ++         +  L    + +DPNI+  +A+ F P   ++G+S
Sbjct: 407 RKTYKQMEIGGVTYPAGVIVELPVLLIHHDPNIWGSDAHEFKPDRFVEGIS 457


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +3

Query: 63  VYGLEGAAVPNDPNIFPINANSFSPASLMQGMSNIQDMASKAGFGPNMNGA-AISTVVDS 239
           V  L+   +   P+IF + AN+++   L +   N+  +    G  PN+     +     +
Sbjct: 354 VAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGT 413

Query: 240 AGKKMTKLLISENGKISTM 296
           AG+ +  L + ++ K S M
Sbjct: 414 AGRHLEALAVLQHIKDSGM 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,849,781
Number of Sequences: 37544
Number of extensions: 219556
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)