Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I03
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    30   0.36 
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   4.4  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    26   5.8  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   7.7  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.7  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 360 SLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQ 211
           SLQ Q G+ H Q+  R      QN+Q  R   R F  + S   LH RS+Q
Sbjct: 126 SLQLQGGDMHRQV-YRWQQEVDQNKQIRRGRSRSFSAKVSDPNLHLRSVQ 174


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 102 IKPVQIADIPIPKYESIDAGMYIIPDEVIQ---ELALAGIELSENV 230
           ++ + I + PIP  +++D+   IIP   ++   ++ +AGI    NV
Sbjct: 298 VRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNV 343


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -3

Query: 345 PGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQSRPRRVLE*LRRG 172
           P + +   +LRH LR  ++++ +   +RE    + +R ++    +++  +  E  RRG
Sbjct: 190 PQSEYELWKLRHLLRKKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDAEASRRG 247


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
 Frame = +3

Query: 66  SSXLIGXXXXXSIKPV---QIADI--PIPKYESIDAGMYIIPDEVIQELALAGIELSENV 230
           +S +I      +IKP+   QI  I  P+ K +      +   D   ++     ++ SE  
Sbjct: 129 TSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKA 188

Query: 231 DNVAIFDIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPVEDADV 401
            N     I+   D    P    N +    A ++++     S+ FV NLD    DAD+
Sbjct: 189 LNGRNILIKSNTDFSGRPSKPANTLSKT-ASIQSSKKEPSSILFVGNLDFETTDADL 244


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = +1

Query: 73  HSLERRPPHQSNPSKSRISQYRN---TKA----STLECTSSPTKSFKN 195
           H   RRPP Q +   ++  + +N   TKA    S++E T SP K  K+
Sbjct: 88  HPRSRRPPRQISIDSAKKEETKNTGSTKAADTKSSVEATISPLKDTKS 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,446
Number of Sequences: 5004
Number of extensions: 51218
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)