Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I02
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...   169   4e-43
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    30   0.31 
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   5.0  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   8.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.8  

>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  169 bits (411), Expect = 4e-43
 Identities = 90/168 (53%), Positives = 109/168 (64%), Gaps = 6/168 (3%)
 Frame = +1

Query: 184 LDQIIRVDHAGELGADRIYAGQMAVLGRTAE--GPLIQHMWDQEKKHREKFEQLINXYRV 357
           LD +IRVD AGELGA++IY GQ  +L  T     P IQHMWDQEK H   F+  +   RV
Sbjct: 43  LDSVIRVDQAGELGANQIYKGQHFILQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRV 102

Query: 358 RPTVLTPIWNVAGFVLGAGTALLGKEAAMACTVAVETVIVDHYNDQLRTLMQDPNVD--- 528
           RPT L P W++AGF LGAGTALLG +AAMACT AVETVI  HYNDQLR      N     
Sbjct: 103 RPTFLRPFWDIAGFALGAGTALLGTKAAMACTEAVETVIGGHYNDQLRETAHLENKAPEF 162

Query: 529 KEILETITRFRDEEQEHHDAGLQ-HGAEQAPGYRALTELIKAGCRAAI 669
           KEI   +  FRD+E EH +  ++   A++AP +  LT  I+ GC+AAI
Sbjct: 163 KEIRSHLAEFRDDELEHLNTAVEGWNAKEAPAHALLTNAIQMGCKAAI 210


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/41 (29%), Positives = 27/41 (65%)
 Frame = +1

Query: 463 ETVIVDHYNDQLRTLMQDPNVDKEILETITRFRDEEQEHHD 585
           E+  VD+  D++   + +P+V++ I  ++TR+R +E++  D
Sbjct: 7   ESKYVDNGEDEVVRQVSEPSVEEPIEASVTRYRSDEEKLDD 47


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 443 MAASLPRSAVPAPNTNPATFHIGVSTVGLT 354
           M +   R A+P P+  P T H+G  +  LT
Sbjct: 77  MGSGYQRDAIPIPSEPPFTAHVGNLSFDLT 106


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 472 IVDHYNDQLRTLMQDPNVDKEILETITRFRDEEQEHHDAG 591
           +VD Y  +L ++    +VD+   E   + R  + EH DAG
Sbjct: 430 LVDEYKLKLESMPVSLDVDETSDEVSLQKRRRKNEHKDAG 469


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 467  VSTATVQAMAASLPRSAVPAPNTN 396
            V   + +A + S PRS+VP+P++N
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPSPHSN 1262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,683
Number of Sequences: 5004
Number of extensions: 51894
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)