Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_I02
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 33 0.19
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 31 1.3
06_03_1040 + 27082978-27083086,27083574-27083632,27083759-270838... 30 1.7
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 30 2.3
01_01_0888 + 6990354-6991862,6991970-6992431 30 2.3
06_01_0623 + 4536817-4536868,4537129-4537328,4537401-4537609,453... 29 5.3
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 29 5.3
06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478 28 7.0
03_06_0343 + 33274329-33274981,33275197-33276121 28 7.0
03_06_0169 - 32125193-32125666,32125774-32126148 28 9.2
02_04_0342 - 22163650-22163709,22164137-22164391 28 9.2
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +3
Query: 81 FNEXDSKDKHAITTDSTHQIGAQQQSTLLEEKSTP*PDNPSGSRR*IGRGPHLRGTNGSL 260
+ E SK+ A+ + + Q L +++P + S + R L +NG L
Sbjct: 476 YPENGSKNSPAVPS---YMAATQSAKAKLRGQNSPRLSSDSAEKNGFTRRHSLPSSNGKL 532
Query: 261 GPHS*RTPHPAHVGPGKE 314
HS RT P H G GKE
Sbjct: 533 NSHSPRTQRPTHAG-GKE 549
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 539 RISLSTFGSCISVRSWSL*WSTITVSTAT 453
R +S FG C+ V S ++ W T+ ST T
Sbjct: 264 RFPVSAFGICLGVSSQAILWKTVATSTPT 292
>06_03_1040 +
27082978-27083086,27083574-27083632,27083759-27083833,
27083908-27084024,27084207-27084277,27084432-27084732,
27084949-27085238,27085779-27085833
Length = 358
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Frame = +1
Query: 367 VLTPIWNVAGFVL-GAGTALLGKEAAMACTVAVETVIVDHYNDQL---------RTLMQD 516
+LTP W V+ F L G +G + +A VE IVD Y+D +Q+
Sbjct: 51 ILTPKWVVSVFFLVGVIFVPVGVVSLLAAQNVVE--IVDRYDDACVPANMTDNKLAYIQN 108
Query: 517 PNVDKEILETITRFRDEEQ 573
PN+ KE T+T D Q
Sbjct: 109 PNISKECTRTLTITEDMNQ 127
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -1
Query: 542 SRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLPRSAVPAPNTNPATFHIGVSTV 363
S S STF + V S ++ +V+ A A+ S V TF + V
Sbjct: 34 SHFSRSTFRLVVDVPRSSFRLTSSSVALALRAAIGGSPSDLHVDPLIDRSFTFLVCSKKV 93
Query: 362 GLTLXSL--MSCSNFSLCFFSWSH 297
GL + SL SC +FS+ +F W +
Sbjct: 94 GLWIYSLRSFSCKDFSVRYFLWKN 117
>01_01_0888 + 6990354-6991862,6991970-6992431
Length = 656
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 539 RISLSTFGSCISVRSWSL*WSTITVSTAT 453
R +S FG C+ + S ++ W I +ST+T
Sbjct: 264 RFPVSAFGMCMGMSSQAILWKNIAISTST 292
>06_01_0623 +
4536817-4536868,4537129-4537328,4537401-4537609,
4538531-4538954
Length = 294
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 557 NLVIVSRISLSTFGSCISVRSWSL*WSTITVST 459
N+ I + +S FG C+ + S + W T+ ST
Sbjct: 106 NVAIPALFPVSAFGICLGMSSQEILWKTVATST 138
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 539 RISLSTFGSCISVRSWSL*WSTITVSTAT 453
R +S FG C+ V S ++ W TI S T
Sbjct: 258 RFPVSAFGMCLGVSSQAILWKTIATSGPT 286
>06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478
Length = 393
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 328 FEQLINXYRVRPTVLTPIWNVAGFVLGAGTALL-GKEA---AMACTVAVETVIV 477
+ LIN + ++TPI VLG GTA GK A A A +V+V T +V
Sbjct: 258 YTTLINPFTKFALLITPIAEAIEGVLGLGTATTGGKPAQYRAAAVSVSVRTALV 311
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 466 TVIVDHYNDQLRTLMQDPNVDKEILETITRFRDEEQEHHDAG 591
T +V + TL DP +EI++ + F++ +++H G
Sbjct: 240 TEVVFKHPKTFETLAMDPEKKREIIDDLDMFKNGKEQHRRVG 281
>03_06_0169 - 32125193-32125666,32125774-32126148
Length = 282
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +2
Query: 164 IGRKIHTLTR*SEWITPVNWARTASTRDKWQSWAAQLKDPSSSTCGTRKRSTGRNLSSSS 343
I I LT + W+TP W T S A L++P ST + +N+ SSS
Sbjct: 34 INNNIPGLTNTNSWVTPQGWILVRDT----VSTATFLQNPHDSTDKIQLPHLSQNVHSSS 89
>02_04_0342 - 22163650-22163709,22164137-22164391
Length = 104
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 458 ATVQAMAASLPRSAVPAPNTNPATFHIGVSTVGLTLXSLMSC 333
ATV AMA + P +AV PA G + + LM C
Sbjct: 52 ATVVAMAVTTPAAAVTTSKARPAATTAGTTMARKLVLLLMCC 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,316,148
Number of Sequences: 37544
Number of extensions: 415328
Number of successful extensions: 1506
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -