Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I02
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   66   4e-11
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   6e-10
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              30   2.3  
SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_23216| Best HMM Match : ATP-synt_Eps (HMM E-Value=4.9)              30   2.3  
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   30   2.3  
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               28   7.1  
SB_7006| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_54915| Best HMM Match : CD225 (HMM E-Value=6.7)                     28   9.4  
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 30/44 (68%), Positives = 38/44 (86%)
 Frame = +1

Query: 175 NPHLDQIIRVDHAGELGADRIYAGQMAVLGRTAEGPLIQHMWDQ 306
           N  +D+IIRVDHAGELGADRIYAGQMAVLG++  GPLI+ ++ +
Sbjct: 30  NDVIDRIIRVDHAGELGADRIYAGQMAVLGKSNIGPLIKPIYSK 73


>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 38/93 (40%), Positives = 53/93 (56%)
 Frame = +1

Query: 409 AGTALLGKEAAMACTVAVETVIVDHYNDQLRTLMQDPNVDKEILETITRFRDEEQEHHDA 588
           AGTA+LGKEAAMACT A+E VI +HY+ QLR L+ +                  ++H D 
Sbjct: 249 AGTAMLGKEAAMACTEAIEEVIGEHYDSQLRELLSEEGA--------------MEKHKD- 293

Query: 589 GLQHGAEQAPGYRALTELIKAGCRAAIQLSXKI 687
                  QAP Y+ L  +I+ GCRAAI ++ ++
Sbjct: 294 -----LLQAPMYKTLKNVIQTGCRAAIWVAERV 321


>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1888

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 490 DQLRTLMQDPNVDKEILETITRFRDEEQEHHDAGL-QHGAEQAPGYRALTELIKAG 654
           D    L++D N     L    RF DEE   H   + QHG  Q PGY  L  + + G
Sbjct: 739 DPKGALLEDDNPAYAHLNRRRRFTDEEDYSHLRNMTQHGVNQRPGYSQLGNMTQHG 794


>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 476 TITVSTATVQAMAASLPRSAVPAPNTNPATFHIGVSTV 363
           T +++  T     ASL     P  +TNPA+ H G ST+
Sbjct: 72  TTSIAEGTPAGSMASLAPPGSPTDDTNPASSHYGSSTI 109


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 278 DPSSSTCGTRKRSTGRNLSSSSMXTE*DLLYSLRYGMWPDLY*ELAQRSSAKRRPWPAPS 457
           D SSS     ++ T  + SS S   +    YS   G + D     ++ +S + R W  PS
Sbjct: 121 DTSSSQYSPTRKYTPSSFSSQSSYLKDKPSYSSLGGPYSDTSRNFSKYTSTRERDWSVPS 180

Query: 458 P 460
           P
Sbjct: 181 P 181


>SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1   LXK*TFLNRLQGNYXITVVIRRFCGISSMNXI-QKINMRSPLIQHIRLAHSSSRPY 165
           L +  +LNRLQ +  I+ V  R  G SS   I    ++R P+  +I  + + SR Y
Sbjct: 181 LTRTIYLNRLQNSLSISTVSLRLHGTSSRLSIGLSRSVREPVFANISCSRTISRTY 236


>SB_23216| Best HMM Match : ATP-synt_Eps (HMM E-Value=4.9)
          Length = 252

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 224 ARTASTRDKWQSWAAQLKDPSSSTCGTRKRSTGRN 328
           ART    D WQS    L   S   CG  K+   RN
Sbjct: 137 ARTDPIEDTWQSLKGSLMGASEKICGYTKKGNWRN 171


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 224 ARTASTRDKWQSWAAQLKDPSSSTCGTRKRSTGRN 328
           ART    D WQS    L   S   CG  K+   RN
Sbjct: 257 ARTDPIEDTWQSLKGSLMGASEKICGYTKKGNWRN 291


>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 70  CGISS--MNXIQKINMRSPLIQHIRLAHSSSRP 162
           C IS+  +N I KIN   P + H+R+   + RP
Sbjct: 294 CSISNKPLNSILKINTSDPALGHLRIPRKNERP 326


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/79 (27%), Positives = 29/79 (36%)
 Frame = +3

Query: 120 TDSTHQIGAQQQSTLLEEKSTP*PDNPSGSRR*IGRGPHLRGTNGSLGPHS*RTPHPAHV 299
           TD T  I   Q+     E + P P++  GS    G  P      GS G       HPA  
Sbjct: 330 TDGTAPIPNDQEGAGNTEGTAPIPNDQKGSGNTDGTAPVQNEQKGSFGSGYSEADHPAAA 389

Query: 300 GPGKEAQGEI*AAHQ*XQS 356
              ++      + HQ  QS
Sbjct: 390 SHTQDVCDTSDSQHQSQQS 408


>SB_7006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = -1

Query: 560 LNLVIVSRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLPRSAVPAP 405
           + + I+  I+++T  + I++ +  +  + IT++TA +   A+SLP  + P P
Sbjct: 61  ITITIIIVITITTNTTAITITTAIIITTAITITTAIIIFTASSLPWLSPPLP 112


>SB_54915| Best HMM Match : CD225 (HMM E-Value=6.7)
          Length = 149

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 115 SPLIQHIRLAHSSSRPYWKKNPHLDQIIRVDHAGELGA--DRIYA-GQMAVLGRTAEGPL 285
           S   + +R+A  S    W + PHL  +  V + GEL    + +Y   Q   LG+T    +
Sbjct: 15  SEYYEEVRIAAKSFIEVWDRLPHLKAV--VQYTGELEGKHENVYNWNQFLELGKTVADRV 72

Query: 286 IQHMWDQ 306
           +Q    Q
Sbjct: 73  LQERMSQ 79


>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 212 PVNWARTASTRDKWQSWAAQLKDPSSST 295
           P  W+   +TR  W  W+A  + P  S+
Sbjct: 381 PPTWSSWTNTRAPWSPWSAPTRPPGGSS 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,639,639
Number of Sequences: 59808
Number of extensions: 433700
Number of successful extensions: 1332
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)