Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H18
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb...    49   9e-07
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    28   1.3  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   4.0  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    26   5.3  
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    25   9.3  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   9.3  

>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 21/43 (48%), Positives = 34/43 (79%), Gaps = 4/43 (9%)
 Frame = +2

Query: 362 EKMQKQRILQKAE----MTHKQRVEKFNQHLDSLTEHFDIPKV 478
           E +Q+QR+LQKA+     THK R++++N+ L+S +EHFD+PK+
Sbjct: 73  ESVQEQRLLQKAKNERLKTHKDRIDEYNRLLESQSEHFDMPKI 115


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 348 IKICRKKCKNKEYYKRL 398
           IKIC + C N+EYYK +
Sbjct: 357 IKICYEPCDNEEYYKSI 373


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 78  ENLKNIHYVMLEVSQSYNLNLL 13
           E L N+H   LE++QS NL+LL
Sbjct: 254 EALINMHTAYLEINQSINLSLL 275


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -2

Query: 690 LSAISSRWAYITNTGKN 640
           L  I  R AYITNTGKN
Sbjct: 137 LELIRVRLAYITNTGKN 153


>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 323 RRTKAEIAYQNMQEKMQKQRI-LQKAEMTHKQRVEKFNQHLDSLTEHFD 466
           R TK      N+  K++   I +  A  +     EK + HL  L +HFD
Sbjct: 83  RHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHLFDHFD 131


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 627 YSGYLNYQKKL*NIKTLLQFDLKF*SVSTFHIFTI 523
           Y  Y+NY+ K   +K L Q   K+     FH FT+
Sbjct: 261 YYCYMNYRIKEDRLKVLQQLLKKYEGRHNFHNFTV 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,037
Number of Sequences: 5004
Number of extensions: 51113
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)