Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H15
         (813 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    87   2e-19
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.8  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   8.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 87.0 bits (206), Expect = 2e-19
 Identities = 46/142 (32%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
 Frame = +3

Query: 402 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 581
           FE   L+  LL  + + G+ KP+ IQ+ +IP+ LSG+D+++ A+ G+GKT A+ +P++  
Sbjct: 160 FETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHN 219

Query: 582 V-------DPKKDTIQALIVV--PTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDI 734
           +       + + +  Q ++V+  PTRELA+Q +    + A ++ ++V V  GGT+     
Sbjct: 220 LLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQR 279

Query: 735 MRIYQNVQVIIATPGRMIDLMD 800
            RI     +++ATPGR+ D ++
Sbjct: 280 GRILGGCHILVATPGRLKDFVN 301


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 342 IPPKDRRIKTSDVTDTRGNEFEEFCLKR 425
           I  K  R ++    D+ GN  EEF L R
Sbjct: 185 ISDKAARPRSLQFVDSEGNILEEFVLSR 212


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 686  HSCNGYYR 709
            H+CN YYR
Sbjct: 1113 HNCNAYYR 1120


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 197 LKLETYNHTNYYLSK 153
           L+LE   HTN+YL++
Sbjct: 236 LELEKEFHTNHYLTR 250


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 197 LKLETYNHTNYYLSK 153
           L+LE   HTN+YL++
Sbjct: 18  LELEKEFHTNHYLTR 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,619
Number of Sequences: 336
Number of extensions: 3310
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)