Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H13
         (569 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1; ...    56   6e-07
UniRef50_Q9RA04 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  

>UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 272

 Score = 56.0 bits (129), Expect = 6e-07
 Identities = 27/49 (55%), Positives = 27/49 (55%)
 Frame = +1

Query: 4   PEAADAPKLADNPVDEDKPADIXXXXXXXXXXXXXXXXXXXXXXIPVAP 150
           PEAADAPKLADNPVDEDKPADI                      IPVAP
Sbjct: 187 PEAADAPKLADNPVDEDKPADISPDAPKAEAKSADDSATTAKDDIPVAP 235


>UniRef50_Q9RA04 Cluster: Putative uncharacterized protein; n=1;
           Rhodococcus erythropolis|Rep: Putative uncharacterized
           protein - Rhodococcus erythropolis
          Length = 283

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -1

Query: 569 TKKPLLLLMLSEIR*FTSTNNY-IVGNF*FHYLNKSLGLGNRQLSTSV*RTPLSLTWGSF 393
           T K ++L  LS I   T+ N Y ++G F   Y  K+ GLG  +L  +      ++TWG F
Sbjct: 132 TPKQVVLAALSFIG--TNGNGYMVIGGFIVAYATKTYGLGKTELLIAT--LASAVTWGVF 187

Query: 392 THI 384
           T I
Sbjct: 188 TMI 190


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 393,769,024
Number of Sequences: 1657284
Number of extensions: 6131016
Number of successful extensions: 14250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14246
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)