Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_H12
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 97 1e-21
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.31
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 26 2.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 3.8
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 3.8
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 6.6
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 97.1 bits (231), Expect = 1e-21
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +1
Query: 163 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTF 342
RFPN NQT+HC+QSY+D+ RC K +GE + PC F Y+SLCP EWV++WD QR GTF
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79
Query: 343 AGRI 354
I
Sbjct: 80 PAPI 83
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.31
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 191 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 349
T++ V TST A NTS + S S P++ ST TS P S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405
Score = 28.7 bits (61), Expect = 0.53
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 191 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 349
T++ V TST A NTS S S P++ ST TS P S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169
Score = 28.7 bits (61), Expect = 0.53
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 191 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 349
T++ V TST A NTS S S P++ ST TS P S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +2
Query: 191 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 349
T++ V TST NTS S S P++ ST TS P S V
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +2
Query: 191 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 349
T++ V TST NTS S S P++ ST TS P S V
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 191 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 349
T++ V TST NTS S S P++ ST +S P S V
Sbjct: 1357 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 1409
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 191 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 349
T++ V TST NTS S S P++ ST +S P S V
Sbjct: 2197 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 2249
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 1 PFQVSNVLSLLVCKALVWLPFS 66
PF + SL VC AL W+ FS
Sbjct: 67 PFHRRGIASLSVCVALHWIAFS 88
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/74 (27%), Positives = 39/74 (52%)
Frame = +2
Query: 122 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMS 301
S+ P ++ +S+ S + T + + +S+ + ++ +S +TIS + S+P S
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS-SSPTSSSSTIS---SSSSSPSS 352
Query: 302 GSTSGTTSAPKAPS 343
S S TTS+ K+ S
Sbjct: 353 SSFSSTTSSSKSSS 366
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 124 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRG-EKYEPCYYFKRVY 279
++ ++ +++ DP P + + +C +Y + +K+RG +KY+P + +Y
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIY 235
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.8 bits (54), Expect = 3.8
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +2
Query: 149 HLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISREC-TGLSAPMSG--STSGT 319
H ST + T T T T T T R A NTS+ + S G SA S T
Sbjct: 141 HSSTTANRTTSTPTTTTART-TRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAG 199
Query: 320 TSAPKAPSPV 349
T A SPV
Sbjct: 200 TGASHRSSPV 209
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 5.0
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = +2
Query: 134 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 313
PT KQ L+ H +RR T+ + T+T + A NT+ T S SA S STS
Sbjct: 486 PTGKQ-LALH----PLRRETSI-LDSTNTTSTN--ATNTTTTTSSSSTASSSASASSSTS 537
Query: 314 GTTSA 328
T+ A
Sbjct: 538 ATSGA 542
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 6.6
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +2
Query: 125 NRPPTSKQHL---STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAP 295
NRPP +T + T K T + ++ + TS A+ + SAP
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
Query: 296 MSGSTSGTTSAPKAPSP 346
++ + S ++ P P P
Sbjct: 1084 VANNVSKPSAVPPPPPP 1100
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 8.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 319 CPTCRPTHWGRETCTL 272
CPT PT W +CT+
Sbjct: 3 CPTHGPTTWNPHSCTV 18
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,796
Number of Sequences: 5004
Number of extensions: 35270
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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