Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H11
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    67   3e-12
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     64   2e-11
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     64   2e-11

>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
 Frame = +3

Query: 9   RC-FLDPLTVLVENXSSSTCRVKSKIS-KXF*LRRGGKXPNRSK*RXTLXNVKFKVRCSR 182
           RC  +DP+ VLV   ++   + K     K F L    K     + + T   VKFKVRCS+
Sbjct: 11  RCGAIDPVVVLVCVVATLATQPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSK 70

Query: 183 FLYTLVITDKEKAEKLKQSLPPGLQVKEV 269
           +LYTL + D +KA KLKQSLPPGL V+EV
Sbjct: 71  YLYTLCVFDADKANKLKQSLPPGLTVQEV 99


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 40/61 (65%)
 Frame = +3

Query: 87  KXF*LRRGGKXPNRSK*RXTLXNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 266
           K F L    K     + + T   VKFKVRCS++LYTL + D +KA KLKQSLPPGL V+E
Sbjct: 9   KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGLTVQE 68

Query: 267 V 269
           V
Sbjct: 69  V 69


>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = +3

Query: 156 VKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 269
           VKFKVRCSR+LYTL + D +KA KLKQSLPPGL V+EV
Sbjct: 32  VKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGLTVQEV 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,224,588
Number of Sequences: 37544
Number of extensions: 79493
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)