Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H10
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit Apc1...    28   1.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   6.9  

>SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit
           Apc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -3

Query: 704 AGSSLELLYRILGPLYTVLESSSSAKPMCRHQALVPSLQSFSSLWH 567
           AG+     YR  G ++  L  S + KP+ +   L+P        W+
Sbjct: 5   AGTGQSKSYRTFGNVFQRLSMSGNPKPLAKKPLLLPEASKAIEFWN 50


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 293 VLSLLVHTYNYVEKESGSDK--LNGNARDVLENILDDKLEEKI 415
           V+S L  T   +EKE  S K  L+GNA+D+    L + L +KI
Sbjct: 623 VISSLRETVAMLEKERESIKKYLSGNAKDLDNTNLMEILNDKI 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,197
Number of Sequences: 5004
Number of extensions: 48826
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)