Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H10
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319           30   2.4  
12_02_0831 + 23529021-23529162,23529383-23529435,23529727-235310...    29   5.4  
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251...    29   5.4  
02_04_0213 + 20974712-20975413                                         29   5.4  
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539     28   9.5  

>03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319
          Length = 317

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 323 YVEKESGSDKLNGNARDVLENILDDKLEEKIEAYLSAFTGTTSHRL 460
           +  K++G+   +   RD+++ +  DK EEKIE   +   GT + +L
Sbjct: 199 FYRKQAGAMLPDFVIRDIMKKLFSDKREEKIELMNATTVGTDAFQL 244


>12_02_0831 +
           23529021-23529162,23529383-23529435,23529727-23531074,
           23531154-23531324,23531672-23532531
          Length = 857

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 315 VCTNNDNTAQTHAITEILKQQGFSVGKS 232
           +  N+ N A  H + +ILK+ GFS G++
Sbjct: 679 IYVNDKNEADFHYVKDILKKSGFSCGEA 706


>03_02_0882 -
           12121917-12124446,12124739-12124919,12125057-12125134,
           12125731-12125764,12125864-12125975,12126053-12126238,
           12126505-12126575
          Length = 1063

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 371 DVLENILDDKLEEKIEAYLSAFTGTTSHRLKRDAMLKPSAVQEDNT-VTPHVEFFNPKMR 547
           D L N  ++K  +      S  TG+ S +   +   +P +    NT VTP VE F+  M+
Sbjct: 426 DSLNNNSEEKTIDSTSQSKSNNTGSDSEKDGAETQAEPGSASASNTVVTPSVEGFHTNMQ 485


>02_04_0213 + 20974712-20975413
          Length = 233

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 704 AGSSLELLYRILGPLYTVLESSSSAKPMCRH 612
           A +  ELL R+   L+ V +SS S  P CRH
Sbjct: 192 ATTGWELLLRLFRKLFAVDKSSPSPAPPCRH 222


>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
          Length = 585

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 305 LVHTYNYVEKESGSDKLNGNARDVLENILDDKLEEKIEAYLSAFTGTTSHRLKRDAMLKP 484
           LV TYN   ++SG+    G  R ++EN+L    + K E ++SA       +L   A+ K 
Sbjct: 410 LVLTYNVAVRKSGAGAARGEERLMVENLLLADEQRKSE-HVSALVRQQQQQLV--ALQKQ 466

Query: 485 SAVQED 502
              QE+
Sbjct: 467 QQQQEE 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,926,463
Number of Sequences: 37544
Number of extensions: 324287
Number of successful extensions: 848
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)