Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H10
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   4.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   7.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   7.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.6  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/57 (19%), Positives = 28/57 (49%)
 Frame = +2

Query: 284 VCAVLSLLVHTYNYVEKESGSDKLNGNARDVLENILDDKLEEKIEAYLSAFTGTTSH 454
           V + +  ++  +N V++    ++ N   RD+++ +LDD   +++    S  +    H
Sbjct: 59  VQSYVECMMKKFNVVDENGNFNEKN--TRDIVQAVLDDNETDQLIVECSPISDANVH 113


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 248 KPCCFRISVIACVC 289
           KP C +I    CVC
Sbjct: 60  KPLCIKICAPGCVC 73


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 248 KPCCFRISVIACVC 289
           KP C +I    CVC
Sbjct: 60  KPLCIKICAPGCVC 73


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 513 VTVLSSWTADGFSI 472
           V  L SWT DGF +
Sbjct: 168 VLKLGSWTYDGFKV 181


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 620 TWVWLTSYSRVPYKVVQG 673
           TW W+T ++ +P   V G
Sbjct: 178 TWFWVTPFTVLPLLKVWG 195


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 620 TWVWLTSYSRVPYKVVQG 673
           TW W+T ++ +P   V G
Sbjct: 178 TWFWVTPFTVLPLLKVWG 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,014
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)