Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_H09
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 53 4e-08
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 50 4e-07
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.32
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 28 1.3
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 28 1.3
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 28 1.7
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 28 1.7
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 28 1.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.2
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 3.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 3.9
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 27 3.9
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 3.9
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 26 5.2
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 5.2
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.8
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar... 26 6.8
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 26 6.8
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 26 6.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.0
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 25 9.0
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 9.0
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 25 9.0
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 9.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 9.0
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 53.2 bits (122), Expect = 4e-08
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +3
Query: 447 EVIRSTKLPIARIKNIMKMDPDVN--IVCSDAVFLVTKATEMFLETIVKETYAFTSSNKR 620
+ +++ LP+ARIK +MK D DV ++ ++A FL K +E+F+ + + N+R
Sbjct: 102 QAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQR 161
Query: 621 KVISKKDLELVIDKVDCLCFL 683
+ + + D+ + K + FL
Sbjct: 162 RTLQRSDIANAVSKSEMYDFL 182
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 50.0 bits (114), Expect = 4e-07
Identities = 25/90 (27%), Positives = 49/90 (54%)
Frame = +3
Query: 429 EKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVCSDAVFLVTKATEMFLETIVKETYAFTS 608
E K ++ P+ARIK IM+ D DV V +++KA E+F+++I++E+ T
Sbjct: 11 ETKPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTR 70
Query: 609 SNKRKVISKKDLELVIDKVDCLCFLEGAMD 698
++ K ++ L+ + V+ FL+ ++
Sbjct: 71 LHQAKRVTVSHLKHAVQSVEQFDFLQDIVE 100
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 30.3 bits (65), Expect = 0.32
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 258 LQNMSEEECHEDVDISDITEHSES---YLENEHLKFALTEATEAENNKLEFELNSEEQVH 428
++ ++E H+ DI D+ + + +++N HL + + ++FE+ E VH
Sbjct: 2007 IERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVH 2066
Query: 429 EKKQKTEVIRSTK 467
+++ T+
Sbjct: 2067 ANSPSVLIVQLTR 2079
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 294 VDISDITEHSESYLEN--EHLKFALTEATEAENNKLE 398
VD++D+T H + L+N E L F+ E ++ + N+ E
Sbjct: 31 VDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFE 67
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +3
Query: 342 EHLKFALTEATEAENNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNI 521
EH K A+ A + N +E EQ+ K T+++RS IKN +K D
Sbjct: 235 EHCKSAVRSAEDELNGAIEHAKILYEQILNKDYNTDLLRSI------IKNQLKFHQDAAA 288
Query: 522 VCSD 533
SD
Sbjct: 289 ALSD 292
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 528 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVISKKDL 644
S V+ T+A ++FLE ++++ +T KRK ++ D+
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 528 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVISKKDL 644
S V+ T+A ++FLE ++++ +T KRK ++ D+
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 528 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVISKKDL 644
S V+ T+A ++FLE ++++ +T KRK ++ D+
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEAENNKLEFELNSEEQVHE 431
SS N+S ++ + I+ +T++ + Y+E HL+F + + L L S
Sbjct: 132 SSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRFEDNLSDLEKPYSLGLTLYSLRVTST 191
Query: 432 KKQKTEVIRST-KLPIARIKNIMKMD 506
TE + ST +P + I I+ +D
Sbjct: 192 DASFTEYLLSTDPIPSSCIHKIITVD 217
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +3
Query: 252 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEAENNKLEFELNSEEQVHE 431
S ++ EEE E + S++++ SES E+E E +E+E E E + +
Sbjct: 83 SDSESSEEEEETESEEDSEVSDESESESESES---ESEEESESEEESDESERSGPSSFLK 139
Query: 432 KKQKTE 449
K +K E
Sbjct: 140 KPEKEE 145
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 246 KPSSLQNMSEEECHED--VDISDITEHSESYLENEHLKFALTEATEAEN 386
K SS +N S E E VD ++ HS + E EH K + + + +N
Sbjct: 3 KNSSHENQSSENIIEFPYVDFEELNVHSNIFSELEHAKPSTQQQQQQQN 51
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 655 ITSSKSFFDITFRLFDDVNA*VSFTIVSRNISVALVTKNTASLHTIFTSGSIF 497
ITSS S F ITF + + + + + +V+ L TIF ++F
Sbjct: 262 ITSSDSLFQITFHAYKPSASFKKSALSEPDFRICVVSSQDTLLPTIFEIDALF 314
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = +3
Query: 270 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEAENNKLEFELNSEEQVHEKKQKTE 449
SE E ++D SDI + + LE + + + + +N+K + +++ + E +
Sbjct: 182 SESEASLEID-SDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEALGIQAQQLLEEPVENLH 240
Query: 450 VIRS 461
+IR+
Sbjct: 241 LIRN 244
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 139 LTSAEEKNAFXN*LHASSERKXSLADGKKERQVETEKTTXQKEFD 5
L + ++K+ N + ASS S+ DGK+ QV ++ +K+ D
Sbjct: 142 LVTVDQKSVM-NCVSASSNNTPSIQDGKQTEQVSSKDGENEKKKD 185
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 273 EEECHEDVDISDITEHSESYL-------ENEHLKFALTEATEAENNKLEFELNSEEQVHE 431
+E+ E++D +I E S+ + +NE L+ L + E + K++ E +SEE++
Sbjct: 690 DEDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMN 749
Query: 432 KKQ 440
+Q
Sbjct: 750 DEQ 752
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 6.8
Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 3/146 (2%)
Frame = +3
Query: 207 FRKXLLFTLHRKYKPSSLQNMSEEEC--HEDVDISDITEHSESYLENEHLKFALTEATEA 380
F L+ LH + +++S ++ ED +S + HS+ + + L
Sbjct: 220 FTSLLVDPLHFMFSQIVFEDLSGKKIMKFEDTAVSTASNHSKQFTKGNLLAIKYIGGLYN 279
Query: 381 ENNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDP-DVNIVCSDAVFLVTKA 557
+ + N V +K V + L + KN K+ P DV D+++
Sbjct: 280 AVYLMGLKKNLLAFVENEKDDLFVAKIFLLAYSSSKNRKKIVPVDVWDAMIDSLYETIN- 338
Query: 558 TEMFLETIVKETYAFTSSNKRKVISK 635
+E KETY FT S K + +K
Sbjct: 339 ----VEETKKETYKFTRSIKTVIPNK 360
>SPAC1610.01 ||SPAC17A5.17|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 83 LTACVQSVXKCILFLCACQSXH 148
LT V V C LC CQS H
Sbjct: 138 LTLYVTDVDSCYQALCTCQSLH 159
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.8
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 249 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEAENNKLEFELNSEEQVH 428
P Q + ++VD S T H E + E+ HL+ + E + E + E L SEE +
Sbjct: 133 PIRKQISKDSSQSQNVD-SGKTNHEEIH-ESRHLQTEIEEPSGLEESSEESVLYSEE-FY 189
Query: 429 EKKQKTE 449
EK + E
Sbjct: 190 EKSDEEE 196
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 555 ATEMFLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCFLEGAMDF*IL 710
A ++ LE I ET+ + S+ + S+ ++ + +K+D + E +D +L
Sbjct: 411 ADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVL 462
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 9.0
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +3
Query: 252 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEAEN-NKLE------FELN 410
S LQN SEE + S + ++ SY +++ LK T + + KL+ ELN
Sbjct: 544 SHLQNFSEELLKKRKLFSSLFSNNVSYKKSKKLKRTHTVHDKCQKVAKLDHYIRDNIELN 603
Query: 411 SEEQVHEKKQKTEVIRSTKLPIAR 482
S+E+ H+ + T + I +
Sbjct: 604 SKEREHDCYEGTLAVPQVNTEIRK 627
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +3
Query: 333 LENEHLKFALTEATEAENNK---LEFELNSEEQVHEKKQKTEVIRSTK 467
L+++ +FAL + +AE N+ EF ++V E KQK EV+++ +
Sbjct: 187 LQHKRHRFAL-KRRQAEKNREEAAEFAQLMAKRVAEAKQKREVVKARR 233
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 715 SYKI*KSIAPSKKHKQSTLSITSSKSFFDITFRL--FDDVNA*VSFTIVSRNISVALVTK 542
++ I +S+ SK +++ S+S+FDIT +L V I ++ + TK
Sbjct: 14 NHSISESLEHSKSELNELSNVSESESYFDITKKLHALSTVVQRQQREIDNQKRDLCTKTK 73
Query: 541 NTASLHTIFTSGSI 500
+ L T+ ++ +I
Sbjct: 74 HIEELQTLLSNANI 87
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +3
Query: 333 LENEHLKFALTEATEAENNK---LEFELNSEEQVHEKKQKTEVIRSTK 467
L+++ +FAL + +AE N+ EF ++V E KQK EV+++ +
Sbjct: 187 LQHKRHRFAL-KRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVVKARR 233
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 228 TLHRKYKPSSLQNMSEEECH-EDVDISDITEHSESYLENEHLKFALTEATEAENNKLEFE 404
TL + P S QN H + + ITE S Y+ + HL++ E+ + LE+
Sbjct: 136 TLPNAHAPHS-QNRRRRSNHLNNPPEAPITEASNEYVYSFHLEYVPLESNTFSASALEYS 194
Query: 405 LN 410
N
Sbjct: 195 KN 196
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 9.0
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +3
Query: 240 KYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEAT---EAENNKLEFELN 410
K K S ++ +EE + IS E +++ E + ++++ EAT + NK + E+
Sbjct: 537 KAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNKQKGEV- 595
Query: 411 SEEQVHEKKQKTEVIRSTKLPIARIKN 491
E+ V E + ++ S+ I ++K+
Sbjct: 596 LEQVVAESEAAKNMVESSNASIQQLKS 622
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,646
Number of Sequences: 5004
Number of extensions: 42474
Number of successful extensions: 189
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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