Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_H09
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical ... 71 1e-12
AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans N... 54 1e-07
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 35 0.073
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 35 0.073
AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical ... 34 0.097
U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical pr... 31 0.68
Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 29 3.6
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 29 3.6
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 29 4.8
Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 28 6.4
>AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical
protein Y53F4B.3 protein.
Length = 179
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/96 (33%), Positives = 58/96 (60%)
Frame = +3
Query: 411 SEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVCSDAVFLVTKATEMFLETIVKE 590
SEE V E ++ E + ++LP+ R+K +++M+PDV ++ ++A+ L+ KA E+F++ +
Sbjct: 17 SEEDVREIEEHVEELVRSQLPLGRVKKVVRMNPDVEMLNNEALQLMAKAAELFIKELSNA 76
Query: 591 TYAFTSSNKRKVISKKDLELVIDKVDCLCFLEGAMD 698
+ KRK + KD++ I K FLE A+D
Sbjct: 77 ANQNAALEKRKTVQTKDIDKAIKKTWAFAFLEDALD 112
>AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans
NFYC-1 protein protein.
Length = 232
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Frame = +3
Query: 411 SEEQVHEKKQK-TEVI--------RSTKLPIARIKNIMKMDPDVN--IVCSDAVFLVTKA 557
+E+ EKKQK TE+ ++ +P+AR+K IM++D DV ++ SDA + +A
Sbjct: 82 TEDFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQA 141
Query: 558 TEMFLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCFL 683
E F+E + + + S +R+++ K D+ + K D FL
Sbjct: 142 AEFFIEEMTAMGWQYVSEARRRILQKADIASAVQKSDQFDFL 183
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 34.7 bits (76), Expect = 0.073
Identities = 22/86 (25%), Positives = 45/86 (52%)
Frame = +3
Query: 249 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEAENNKLEFELNSEEQVH 428
P ++ N+ E+ +E+ D + E E ENE A+ E +++ + E + ++EE V
Sbjct: 429 PGAIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVS 487
Query: 429 EKKQKTEVIRSTKLPIARIKNIMKMD 506
+KK++ + + K +K + +MD
Sbjct: 488 KKKEEKKKEKKAK----EVKEVGRMD 509
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 34.7 bits (76), Expect = 0.073
Identities = 22/86 (25%), Positives = 45/86 (52%)
Frame = +3
Query: 249 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEAENNKLEFELNSEEQVH 428
P ++ N+ E+ +E+ D + E E ENE A+ E +++ + E + ++EE V
Sbjct: 429 PGAIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVS 487
Query: 429 EKKQKTEVIRSTKLPIARIKNIMKMD 506
+KK++ + + K +K + +MD
Sbjct: 488 KKKEEKKKEKKAK----EVKEVGRMD 509
>AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical
protein W10D9.4 protein.
Length = 403
Score = 34.3 bits (75), Expect = 0.097
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 426 HEKKQKTEVIRSTKLPIARIKNIMK--MDPDVNIVCSDAVFLVTKATEMFLETIVKETYA 599
H K + + + LPIA + IMK MDP + DA + F+ I E
Sbjct: 52 HPNKSQVLLDQERFLPIANVVRIMKTQMDPQAKL-AKDAKECAQECVSEFISFIASEAAE 110
Query: 600 FTSSNKRKVISKKDL 644
+ KRK I+ DL
Sbjct: 111 ICNITKRKTITADDL 125
>U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical
protein T24G10.2 protein.
Length = 347
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 408 NSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVCSDAV 539
+ E+ EKK+KTE ++ +LP+ + K +K D D + DAV
Sbjct: 86 SDHEEGEEKKEKTEKVKKEELPV-KAKKEVKEDSDSDSGVEDAV 128
>Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical
protein F27D4.4a protein.
Length = 374
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 270 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEAENNKLEFELNSEEQVHEKKQKTE 449
SE++ E V I D T ++ N++ KF + NN +L +++ +KK+K E
Sbjct: 12 SEQKRKEKV-IEDKTFGLKNKKGNKNQKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDE 70
Query: 450 VI 455
++
Sbjct: 71 LL 72
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEAENNKLE 398
+S+QN+ + + D+D+S++ + Y HL ++A+ E E NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEAENNKLE 398
+S+QN+ + + D+D+S++ + Y HL ++A+ E E NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEAENNKLE 398
+S+QN+ + + D+D+S++ + Y HL ++A+ E E NKL+
Sbjct: 160 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 205
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein.
Length = 582
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEAENNKLE 398
+S+QN+ + + D+D+S++ + Y HL ++A+ E E NKL+
Sbjct: 160 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 205
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEAENNKLE 398
+S+QN+ + + D+D+S++ + Y HL ++A+ E E NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 28.7 bits (61), Expect = 4.8
Identities = 26/90 (28%), Positives = 46/90 (51%)
Frame = +3
Query: 393 LEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVCSDAVFLVTKATEMFL 572
LE +L +++V K + ++ S KL A ++ ++ D I+ + AV + +TEM+L
Sbjct: 408 LEQDLKDKKKVLRKALE-QIPSSVKLWKAAVE--LEDPEDARILLTRAVECCSSSTEMWL 464
Query: 573 ETIVKETYAFTSSNKRKVISKKDLELVIDK 662
ETY N RKV++K + D+
Sbjct: 465 ALARLETY----ENARKVLNKAREHIPTDR 490
>Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.10 protein.
Length = 376
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 291 DVDISDITEHSESYLENEHLKFALTEATEAENNKLEFELNSEEQVHEKKQKTEVIRSTKL 470
D ++D+ E +E E EA E + +E EE+V E K+K E +R
Sbjct: 121 DESMADVMEEINQEVEEEEEG----EAEEGQEEVVEEVEEDEEEVEEIKEKVEEVREVTP 176
Query: 471 PIARIKNIMK 500
P I + K
Sbjct: 177 PKDLINGMPK 186
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +3
Query: 261 QNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEAENNKLEFELNSEEQVHEKKQ 440
++ EEE +ED D + ++ + ++E + E EAE+ + E N E+V E+K+
Sbjct: 34 EDEDEEEENEDEDEDEDDDNDDDEDDDEEEEDEDEEEDEAEDEAEDDEEN--EEVKEEKE 91
Query: 441 KTEVI 455
EV+
Sbjct: 92 DEEVV 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,778
Number of Sequences: 27780
Number of extensions: 232458
Number of successful extensions: 861
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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