Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H08
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    29   0.81 
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    28   1.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   5.7  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   5.7  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   7.5  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   10.0 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   10.0 

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -1

Query: 626 TDQEHENLERCLIIIIACQP-SVFRKKV 546
           T+ EH+NL + ++++++ QP S FR+ V
Sbjct: 881 TNDEHQNLHKEMLVVLSSQPKSTFRRAV 908


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +3

Query: 387 QKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKEDDLQHLHLFTEYG 566
           + + VV+ D  G     S++ DSS +FA   +L     + ++ ++   D Q LH+F ++G
Sbjct: 585 EDIEVVVFDMVGV----SSI-DSSALFAFQRILKEYVEHQVEVHLVSLDPQVLHIFEKHG 639

Query: 567 RL 572
            L
Sbjct: 640 LL 641


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 480 LLSSIQIYNLKENIKEDDLQHLHLFTEYGR 569
           LLS ++++ +  +I  +DL HL L  +Y R
Sbjct: 207 LLSPLEVHTIFTHISSEDLAHLGLNEQYAR 236


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 149 GQGPSCGRSQRRWRLPRWKVLLAGLLPQIPK 241
           G+GP CG     WR+  W   L G++P + +
Sbjct: 645 GKGPGCGFWAPSWRV--WLFFLRGIVPLLER 673


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 360 EPIVTRFNDQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKEDD 533
           EP+    N   ++   +D+Q  +  SS +  S+  F   ++  S +I  +KE+    D
Sbjct: 600 EPVSLE-NQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTEIEGIKESFASTD 656


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 207 SFLLDFFLRYLKAPPSSRDSAAWLGQEDEPLTGF 308
           S +LD FLR L      ++SA WLG   E ++ +
Sbjct: 444 SSILDCFLRRLAQLGHYKESAEWLGMAIEKISTY 477


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 420 GTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENI 521
           G F+NSS    +++I  L TLL  I +  +K +I
Sbjct: 447 GCFENSSLNVQTTSIQILGTLLDIIDVTTVKSSI 480


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 381 NDQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKEN---IKEDDLQHLHL 551
           N QK+   L D   +     T +  S++    +     +I NLK+N   I  +D+  +H+
Sbjct: 33  NSQKIKRTLTDKNASNQEQGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHI 92


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -2

Query: 361 SDHRTIPVV*RS----QPARQMNPVSGSSSWPSHAALSRDEGGAFRYLRKKSSKKD 206
           SD  T+ ++ RS    Q  +Q+   +G S W  HA L     G+    +K SS  +
Sbjct: 180 SDSATMGIISRSAGLGQNTKQICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSE 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,564
Number of Sequences: 5004
Number of extensions: 56297
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)