Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H08
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434...    62   4e-10
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692...    59   2e-09
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869...    48   1e-05
09_06_0072 - 20682424-20682870,20683928-20684854                       30   2.6  
01_06_0367 + 28789824-28790110,28790204-28790744                       30   2.6  

>07_01_0584 +
           4345134-4345237,4346165-4346267,4346397-4346466,
           4346552-4346590,4346684-4346801,4346894-4346951,
           4347031-4347095,4347281-4347341,4347678-4347779,
           4348005-4348070,4348399-4348443,4348540-4348797,
           4349289-4349501,4350103-4350411,4350461-4350613
          Length = 587

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
 Frame = +3

Query: 327 DRQTTGIVLWSEPIVTRFNDQKVAVVLMDTQGTFDN--SSTVRDSSTIFALSTLLSSIQI 500
           D +T GI +W  PI    N  KV+V+ +DT+G F++   S V D   IFAL+T+LSSI I
Sbjct: 101 DTKTKGIWVWGTPIELDVNGSKVSVLYLDTEG-FESIGKSNVYDDR-IFALATVLSSILI 158

Query: 501 YNLKENIKEDDLQHLHLFTE 560
           YNL E I+E D+  L    E
Sbjct: 159 YNLPETIREADISRLSFAVE 178


>03_06_0300 +
           32967935-32968029,32968975-32969077,32969175-32969244,
           32969464-32969581,32969687-32969744,32969831-32969895,
           32969990-32969996,32970087-32970147,32970757-32970776,
           32970858-32970923,32971126-32971293,32971372-32971629,
           32972098-32972310,32972824-32973099
          Length = 525

 Score = 58.8 bits (136), Expect(2) = 2e-09
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
 Frame = +3

Query: 342 GIVLWSEPIVTRFNDQKVAVVLMDTQGTFDN--SSTVRDSSTIFALSTLLSSIQIYNLKE 515
           GI +W  P+    +  KV+V+ +DT+G F++   S V D   IFAL+T+LSS+ IYNL E
Sbjct: 90  GIWIWGTPVEMDIDGSKVSVLYLDTEG-FESVGKSNVYDDR-IFALATVLSSVLIYNLPE 147

Query: 516 NIKEDDLQHLHLFTE-----YGRLACDDDDEAAFQVLMFLVRDW 632
            ++E D+  L    E     YGR+   D      ++L  + RD+
Sbjct: 148 TVREADISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQRDF 191



 Score = 21.4 bits (43), Expect(2) = 2e-09
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 192 YRGGKSFLLDFFL 230
           YR GKSFLL+  L
Sbjct: 71  YRSGKSFLLNQLL 83


>05_07_0116 -
           27785083-27786123,27786201-27786278,27786364-27786976,
           27787128-27787213,27787316-27787438,27787600-27787734,
           27787930-27788019,27788796-27788981,27789560-27789661,
           27789787-27789900,27790010-27790153,27790260-27790325,
           27790895-27791056,27791668-27791916
          Length = 1062

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 336 TTGIVLWSEPIV-TRFNDQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLK 512
           T G+ +WS P+  T  +  +  +VL+DT+G      T   S  IF+L+ LLSS+ IYN  
Sbjct: 101 TKGLWMWSAPLKRTGLDGTEYNLVLLDTEGIDAYDQTGTYSIQIFSLAVLLSSMFIYNQM 160

Query: 513 ENIKEDDLQHLHLFTE 560
             I E  L  L L TE
Sbjct: 161 GGIDEAALDRLSLVTE 176


>09_06_0072 - 20682424-20682870,20683928-20684854
          Length = 457

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 317 PPNESRQRLVFLAQPRSTITRRGGRF*VSEEEVQQEG 207
           PPN+  Q  VFL  P S   RR G F V  E +  +G
Sbjct: 283 PPNQRMQLEVFLTLPESDYNRRLGVFQVRAEFLSADG 319


>01_06_0367 + 28789824-28790110,28790204-28790744
          Length = 275

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 273 WLGQEDEPLTGFIWRAGCDRQTT 341
           W  +EDE L  F+ R GCDR  T
Sbjct: 25  WTPEEDEVLARFVAREGCDRWRT 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,959,016
Number of Sequences: 37544
Number of extensions: 410444
Number of successful extensions: 1154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)