Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H05
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +1

Query: 532 CTSFQCDQWRITCWK 576
           C + +C+  + TCW+
Sbjct: 873 CVTCKCENGKPTCWR 887


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 735 AKPPSSPTAVESNP 694
           A+PPS+P+A  S P
Sbjct: 413 ARPPSTPSADGSKP 426


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 18/74 (24%), Positives = 29/74 (39%)
 Frame = +2

Query: 545  NVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDE 724
            N+ +       +L   E  I P+G  +   +M   S   HH    + E+ G +S    D 
Sbjct: 1136 NIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESANETDS 1195

Query: 725  GGFAPNIQNNKDAL 766
               +   QN +D L
Sbjct: 1196 ETVSTVPQNKRDDL 1209


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 18/74 (24%), Positives = 29/74 (39%)
 Frame = +2

Query: 545  NVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDE 724
            N+ +       +L   E  I P+G  +   +M   S   HH    + E+ G +S    D 
Sbjct: 1136 NIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESANETDS 1195

Query: 725  GGFAPNIQNNKDAL 766
               +   QN +D L
Sbjct: 1196 ETVSTVPQNKRDDL 1209


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 18/74 (24%), Positives = 29/74 (39%)
 Frame = +2

Query: 545  NVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDE 724
            N+ +       +L   E  I P+G  +   +M   S   HH    + E+ G +S    D 
Sbjct: 1136 NIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESANETDS 1195

Query: 725  GGFAPNIQNNKDAL 766
               +   QN +D L
Sbjct: 1196 ETVSTVPQNKRDDL 1209


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 18/74 (24%), Positives = 29/74 (39%)
 Frame = +2

Query: 545  NVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDE 724
            N+ +       +L   E  I P+G  +   +M   S   HH    + E+ G +S    D 
Sbjct: 1136 NIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESANETDS 1195

Query: 725  GGFAPNIQNNKDAL 766
               +   QN +D L
Sbjct: 1196 ETVSTVPQNKRDDL 1209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,551
Number of Sequences: 336
Number of extensions: 3693
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)