Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_H04
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 108 6e-25
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 33 0.038
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 32 0.067
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 31 0.16
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 31 0.16
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 30 0.36
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 1.9
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 27 2.5
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 3.3
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 3.3
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 27 3.3
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 4.4
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 5.8
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 5.8
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 108 bits (260), Expect = 6e-25
Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Frame = +3
Query: 147 PLXTPAPTYDEVLLSQLLDMGFPVEACKKSLYYTNNSGIEAASNWLMEHMTDWDFEHKFE 326
P T +++ + QL MGFP+ C+++L T NS E A NWL EHM D + + E
Sbjct: 569 PEKTETIEWNQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMEDPEIDKPIE 628
Query: 327 PPGTKPSDAAVGANVDEASVEQIMSMGFTRAQVVRALGATGGDVTRALDWIFSRADQLDL 506
P ++V E +V+ + GFT AQ + L + ++ RA+DWI + D+
Sbjct: 629 VSELLPK---ADSSVSEENVQSLCEFGFTVAQARKGLLESNNNIERAVDWILNHPDESFE 685
Query: 507 DEPTPGPD-----RTLGCRDG---PXKYKLIAFISHMGTSTMVGHYVCHILHE----GRW 650
+ P G D +G + P Y L A ISH G+S GHYV I E +W
Sbjct: 686 EPPLEGSDSSIKNENMGSWESTNVPVNYNLKAIISHKGSSAHAGHYVAFIRKEIDGKQQW 745
Query: 651 VIFNDNKV 674
V+FND KV
Sbjct: 746 VLFNDEKV 753
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 33.1 bits (72), Expect = 0.038
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +3
Query: 564 YKLIAFISHMGTSTMVGHYVCHIL---HEGRWVIFNDNKVAL 680
Y L+ +SH G S GHY I + W FND KV++
Sbjct: 397 YDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVSI 438
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 32.3 bits (70), Expect = 0.067
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 555 PXKYKLIAFISHMGTSTMVGHYVCHILHEGRWVIFNDNKV 674
P Y L AFI H G GHY+ +L W +D+ V
Sbjct: 356 PSNYNLFAFICHYG-QLENGHYISDVLFNNEWCHIDDSIV 394
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 564 YKLIAFISHMGTSTMVGHYVCHILHEGRWVIFNDNKVALS 683
Y L + I+H G+ T GHY+C+ L + W ND+ + S
Sbjct: 286 YILRSLITHSGSVTY-GHYLCYRLQDDIWWKANDSLITKS 324
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 31.1 bits (67), Expect = 0.16
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 564 YKLIAFISHMGTSTMVGHYVCHILHEGRWVIFNDNKV 674
Y+L + + H GT GHY+ + ++ +W + +D +
Sbjct: 379 YQLYSVVCHKGTLD-TGHYIAYTYYQNQWFLLDDTTI 414
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 29.9 bits (64), Expect = 0.36
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 564 YKLIAFISHMGTSTMVGHYVCHI-LHEGRWVIFNDNKVALS 683
Y+LI + H G ST GHY G W+ F+D+ V+ S
Sbjct: 371 YELIGVLVHAGGSTRSGHYYSFCKSSNGVWLKFDDDFVSNS 411
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 573 SVCIFXVRPYIQVSCQVPGWVRPGRVDQ 490
SV + R YI+++ PGW P VD+
Sbjct: 511 SVAVRIKREYIKIASPSPGWSLPTNVDE 538
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 378 ASVEQIMSMGFTRAQVVRALGATGGDVTRALDWI 479
+ + Q++SMGF + +AL A GD+ A ++
Sbjct: 298 SKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 331
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 564 YKLIAFISHMGTSTMVGHYVCHILHEG-RWVIFNDNKV 674
Y L + I H+G GHYV + + WV+F+D V
Sbjct: 358 YYLSSVIVHVGGGPHRGHYVSIVRTKTYGWVLFDDENV 395
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 561 KYKLIAFISHMGTSTMVGHYVCHI--LHEGRWVIFNDNKV 674
+Y L A + H GTS GHY + L + W +D +
Sbjct: 435 EYDLNAVVYHHGTSASGGHYTVDVQQLDKSGWFRIDDTHI 474
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 381 SVEQIMSMGFTRAQV-VRALGATGGDVTRALDWI 479
S+ + MGF+ V AL T GDVTRA++ I
Sbjct: 161 SLSTLHDMGFSDDSVNTHALEETNGDVTRAIEKI 194
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 383 ACFINVGTHGRI--RRLSPRRFKLMFKVPIGHVFHEPVGRG 267
A F ++G H + R + R K VP+G VF EP G
Sbjct: 907 ASFFDIGGHSILATRLIFELRKKFAVNVPLGLVFSEPTIEG 947
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 471 DWIFSRADQLDLDEPTPGPD 530
DW+ R D LD++ P P+
Sbjct: 385 DWVMIREDSLDIERPCRDPE 404
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 223 RARNLCTTPTTLVSKPRPTGSWNT*PIGTLNISLNRLGLSLRMRPWVPTLMKQA 384
++R+ T+PT+ V+ P PT + ++ N ++ R+ +LR P + ++A
Sbjct: 458 QSRSTTTSPTSAVASPAPTENEDS------NAAIERVANTLRKNPTISRRTRRA 505
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,603
Number of Sequences: 5004
Number of extensions: 71667
Number of successful extensions: 208
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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