Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H03
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    28   1.4  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    27   3.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   3.2  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   4.2  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    26   7.4  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    26   7.4  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    26   7.4  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   9.7  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   9.7  

>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 623 VVDVKLDLIPFYDYAAELPRLIHTANSTLVDVGLVNITTSKD 748
           VV V +  + FY  A  +P+   TANST+   GL    + ++
Sbjct: 277 VVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEE 318


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 311 PIAGGCCPWSCQPLY 267
           P+A G C W+C P Y
Sbjct: 166 PVADGFCKWNCWPYY 180


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 22/86 (25%), Positives = 34/86 (39%)
 Frame = +2

Query: 548 VDSVLSDKEVMVRVHGQYKHSWRAGVVDVKLDLIPFYDYAAELPRLIHTANSTLVDVGLV 727
           V+    D+ V  ++ G       A   + + + IP Y   +E        N      G  
Sbjct: 544 VEEAAMDETVAFQIRGNNVELPSADKENAEREEIPSYSDKSENFNTTSFTNHERSPNGNN 603

Query: 728 NITTSKDYNSSRFALHMLLVXTDGWG 805
           N+  SKD NSS  + H++   TD  G
Sbjct: 604 NLKFSKDPNSSSPSRHVVATPTDKLG 629


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = -1

Query: 396 GTCLSHFTCIVEFSSVSANTTVGIPPVKSHSWWMLSLELSAFI*TKVFADVHSAHPGFNF 217
           G CL  F  I     + A  T  +    S S+  + + LS  + +  F D+   HP F  
Sbjct: 232 GWCLFLFIAIKPLVYLLAVKTRSLKDKPSESF--ICIVLSMVLVSAFFTDIIGIHPIFGG 289

Query: 216 AVITRSCPHTIDIAL-LNNKIKKFI 145
            ++    PH  D+ + +  KI+  +
Sbjct: 290 FLVGTIIPHENDLTVKITEKIEDLV 314


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 234 HPGFNFAVITRSCPHTI 184
           HP  N  ++T  CPHT+
Sbjct: 318 HPALNAILVTPVCPHTL 334


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 479 DKGHISPQCEQRPMSL 526
           + GH+S QCEQ P  L
Sbjct: 131 ENGHLSGQCEQNPKGL 146


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 350 TELNSTMQVKWDRQVPVKFLLSETPKYCFAIAIDKLYE 463
           TE++ T QV  + +V ++  L +TP Y   I  DK +E
Sbjct: 74  TEIHVTSQVVRENRVQLQLNLIDTPGYGDQINNDKCWE 111


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 412 QQKLHRHLSVPFHLHRRVQFG*CKHHSRDPTCEVP 308
           Q +L + L +PFH+H  ++   C + +     E+P
Sbjct: 670 QDRLDKQLVLPFHMHINLELLECVYLTCSMLMEIP 704


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 725 VNITT-SKDYNSSRFALHMLLVXTDG 799
           VNITT SKD   +RF +  L+  TDG
Sbjct: 255 VNITTNSKDTRLARFFVSSLIPFTDG 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,757
Number of Sequences: 5004
Number of extensions: 71299
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)