Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H03
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0295 + 2235209-2235263,2236182-2236361,2236478-2236567,223...    29   5.8  
05_01_0001 + 3358-3774,3878-4086,4420-4493,4925-4935                   29   5.8  
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304...    29   5.8  
01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370...    28   7.7  

>12_01_0295 +
           2235209-2235263,2236182-2236361,2236478-2236567,
           2236947-2237131,2237200-2237358,2237437-2237589,
           2237938-2238264
          Length = 382

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 189 TIDIALLNNKIKKFIVIT-KGK*FTRILFCY-*ARPWLEXRKQKIKSSW 49
           T D+ +LN+K+KK ++    GK  +R   C+   R W++    K + +W
Sbjct: 48  TSDMEVLNDKVKKQVIKEGHGKKPSRFATCFVHYRAWVQGSSHKFEDTW 96


>05_01_0001 + 3358-3774,3878-4086,4420-4493,4925-4935
          Length = 236

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 572 EVMVRVHGQYKHSWRAGVVDVKLDLIPFYDYAAELPRLIHTANSTLVDVG 721
           +  V++   Y+  +   +++   +L+P   + AEL RL+   N+ + D+G
Sbjct: 71  QTKVKLDEAYERMFTECMIECDQELVPLEAHIAELKRLLLLPNNEIEDIG 120


>01_03_0088 +
           12327339-12328092,12329474-12329601,12330249-12330474,
           12332638-12332765,12332880-12333033,12333408-12333841
          Length = 607

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 658 VERDEIQLDIHDASSPAVLILTVDSNHHLLVGEHAVDQGPRHILERHRPLFALRADVA 485
           VE   +   + + S PAVL+   +SN  +L  E+  D+     LE  +  F   +DVA
Sbjct: 516 VEDFSVTSQVVEHSFPAVLVANDESNPDVLNAEYTEDEPETGTLEPQQHEFTESSDVA 573


>01_01_0507 -
           3704314-3704449,3705038-3705094,3705219-3705297,
           3705380-3705486,3705833-3705949,3706077-3706165,
           3706668-3706721,3706800-3706866,3706971-3707128,
           3707318-3707386,3707481-3707618,3707706-3707740,
           3707829-3707952
          Length = 409

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 568 VGEHAVDQGPRHILERHRPLFALRADVALILHIIVFV 458
           VG+H     P      H   F L AD AL+  I+VFV
Sbjct: 4   VGKHGESSPPSDRRPLHFAAFLLLADAALVALIVVFV 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,680,561
Number of Sequences: 37544
Number of extensions: 504776
Number of successful extensions: 1357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)