Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_H03
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    29   0.051
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 29.1 bits (62), Expect = 0.051
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +2

Query: 548 VDSVLSDKEVMVRVHGQYKHSWRAGVVDV--KLDLIPFYDYAAELPRLIHTANSTLVDVG 721
           V S++S+  +      +   SW A + ++    DL+  Y+     PR     N+T++   
Sbjct: 418 VPSLVSNVRITSVKSSELSISWDAPITEIGGDSDLVERYEVRC-YPRYDDATNATVIQTS 476

Query: 722 LVNITTSKDYNSSRFALHMLLVXTDGWG 805
            ++ T      S+ +A+ +    T GWG
Sbjct: 477 ELSATFKGLKPSTDYAIQVRAKTTRGWG 504


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 745 LRSSDVDEANV----HEGRVCCVYETGQFGRVVVERDEIQLDIHDASS 614
           L+  D+  AN+     EG  C V +   F +++   DEI+    D+SS
Sbjct: 294 LQGDDLRTANIIADDPEGVSCLVIDRETFNQLISSLDEIRTRYKDSSS 341


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 198 CPHTIDIALLNNKIKKFI 145
           CP+T+D A+  N I  FI
Sbjct: 562 CPYTVDAAIYGN-ISHFI 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,299
Number of Sequences: 438
Number of extensions: 4577
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)