Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_G23
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    33   0.040
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    28   1.1  
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    27   3.4  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    26   6.0  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   7.9  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   7.9  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    25   7.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   7.9  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = +3

Query: 324 CEICTKPLNEGECIRL--TCYHVXHWSCAESKYRALPRTTAPAGYXCPSC 467
           C +CT  +N    I    TCYHV H SC     +          + CP C
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYC 246


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 227 SECLRKLYGYKSSKVYNSVISSMAARQ*LQSHM*DLYKTIK 349
           S+ L K+ G+K+S V+   IS+++    +Q    DLYK  K
Sbjct: 343 SDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK 383


>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +3

Query: 237 CENCMVTNHPKCIIQSYLQWLQDSDYNPICEICTKPLNEGECIRLTCYHVXHWSCAESK 413
           C N ++  + KC +  Y  W+++ +   +   C++PL   E  ++       WS  E K
Sbjct: 11  CGNLILVPYQKCHVLKYHNWMKNEELQEL--TCSEPLTLDEEYQMQA----SWSTDEDK 63


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 225 RVNVCE-NCMVTNHPKCIIQ 281
           +VNVC  NCM  N PK I +
Sbjct: 222 KVNVCYINCMTINEPKAIFE 241


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 155 FWYPAFTLKRNYLNSKHKIVTESSIXKTXIQ*VQQYSHQF 36
           F Y  F L+    +S H I +++ + K  ++   + +HQF
Sbjct: 38  FHYSPFILQEKVQSSNHTIRSDTKLWKRLLKITGKQAHQF 77


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +3

Query: 315 NPICEICTKPLNEGECIRLTCYHVXHWSCAESK 413
           N  C  C +PL     +   C H  H SC   K
Sbjct: 834 NESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEK 866


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 245 IFANIHSMFETKLICHSS 192
           IF N HSM++ KL  H++
Sbjct: 164 IFCNFHSMYQIKLSIHAT 181


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 198 LVSWDTYTSPXWF 160
           L+SW  YT+P WF
Sbjct: 50  LISWLQYTNPNWF 62


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 237  CENCMVTNHPKCIIQSYLQWLQDSDYN-PICE 329
            CE C    H KC+  S  +  QD  +  PIC+
Sbjct: 1112 CEICHEWYHAKCLKMSKKKLRQDEKFTCPICD 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,926
Number of Sequences: 5004
Number of extensions: 57569
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)