Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_G23
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0084 - 640563-641000 35 0.072
02_05_1086 + 33994295-33994402,33994485-33994674,33994734-339947... 33 0.29
01_06_0630 - 30723903-30724496 33 0.29
02_05_0358 + 28264928-28266049 32 0.38
04_03_0908 + 20743436-20744018,20744128-20744168,20744320-207445... 32 0.51
05_04_0172 + 18718661-18718930,18719410-18720252,18720326-187203... 31 0.89
02_04_0137 + 20137615-20138223 30 1.5
11_08_0072 + 28154168-28154680 29 2.7
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 29 2.7
06_03_0347 + 19783824-19784348 29 3.6
04_04_0994 + 29980076-29980441,29980900-29980998,29981075-299816... 29 3.6
04_04_1108 + 30961600-30962013,30963131-30964465 29 4.7
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 29 4.7
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 4.7
04_04_0058 - 22416949-22418196 28 6.2
04_04_0978 - 29856872-29858023 28 8.3
01_05_0598 + 23548081-23548186,23548277-23549508,23549621-235496... 28 8.3
>11_01_0084 - 640563-641000
Length = 145
Score = 34.7 bits (76), Expect = 0.072
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Frame = +3
Query: 264 PKCIIQSYLQWLQDSDYNPICEICTKPLNEGE--CIRLTCYHVXHWSCAESKYRALP-RT 434
PK + + + D + C IC L EGE C + C H H C YR L
Sbjct: 52 PKIWLPDHTHHRRQRDESSECSICLGELEEGERCCTLVACRHEFHKECI---YRWLANHN 108
Query: 435 TAPAGYXC---PSCATXXFPPPNLVSPVADV 518
T P P+ + PPP+ SP ++V
Sbjct: 109 TCPLCRHMPLPPASSPPPAPPPHHASPPSNV 139
>02_05_1086 +
33994295-33994402,33994485-33994674,33994734-33994789,
33995413-33995550,33995655-33995848,33996125-33996467
Length = 342
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 324 CEICTKPLNEGECI-RLTCYHVXHWSCA 404
C +C + L GE + L C H HW CA
Sbjct: 284 CAVCLEELRAGEAVAHLPCTHRFHWGCA 311
>01_06_0630 - 30723903-30724496
Length = 197
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 306 SDYNPICEICTKPLNEGECIRL--TCYHVXHWSCAESKYRALPRTTAPAGYXCPSCATXX 479
+D + +C IC +GE +R+ C H H C ++ R R + CP C +
Sbjct: 116 ADADAMCSICLSEYADGEMLRVMPDCRHRFHVCCLDAWLR---RNAS-----CPVCRSSP 167
Query: 480 FPPPNLVSPVADVLKE 527
P P + +P+A L E
Sbjct: 168 IPTP-VATPLATPLSE 182
>02_05_0358 + 28264928-28266049
Length = 373
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 315 NPICEICTKPLNEGECIRL--TCYHVXHWSCAESKYRALPRTTAPAGYXCPSC-ATXXFP 485
+P C +C P +RL C H H SC ++ R P CP C AT P
Sbjct: 146 SPDCAVCLSPFAPEAELRLLPACRHAFHASCVDAWLRTTP--------SCPLCRATVSLP 197
Query: 486 PPNLVSPVA 512
P L + A
Sbjct: 198 HPPLPTAAA 206
>04_03_0908 +
20743436-20744018,20744128-20744168,20744320-20744588,
20744793-20744832
Length = 310
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 285 YLQWLQDSDYNPICEICTKPLNEGECIRL--TCYHVXHWSCAESKYRALPRTTAPAGYXC 458
Y L+ + +P+C IC +GE +R+ C H H C + L R+T C
Sbjct: 103 YSTGLKLNTVSPMCAICLSDFEDGEHVRVLPKCNHGFHVRCIDR--WLLARST------C 154
Query: 459 PSCATXXFPPPNLVS 503
P+C F P S
Sbjct: 155 PTCRQSLFGAPQKAS 169
>05_04_0172 +
18718661-18718930,18719410-18720252,18720326-18720354,
18720439-18720529,18720625-18720779,18721552-18721662,
18722579-18722645
Length = 521
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 324 CEICTKPLNEGECIR-LTCYHVXHWSCAESKYRALPR 431
C IC EG+C+R L C H H +C + + + R
Sbjct: 464 CYICLVEYAEGDCVRILPCNHEFHLTCVDKWLKEIHR 500
>02_04_0137 + 20137615-20138223
Length = 202
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 315 NPICEICTKPLNEGECIRL--TCYHVXHWSCAESKYRALPRTTAPAGYXCPSCATXXFPP 488
+P C IC L GE +R+ C H H C + L R+T CP+C F
Sbjct: 130 SPACAICLADLEPGERVRVLPKCNHGFHVRCVDR--WLLARST------CPTCRQPLFAT 181
Query: 489 P 491
P
Sbjct: 182 P 182
>11_08_0072 + 28154168-28154680
Length = 170
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 324 CEICTKPLNEGECIRL--TCYHVXHWSCAESKYRALPRTTAPAGYXCPS 464
C +C +GE IRL C H H +C + R R T P P+
Sbjct: 118 CPVCLSEFADGELIRLLPECMHYFHAACIDEWLRT--RATCPLCRAAPA 164
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Frame = +3
Query: 264 PKCIIQSYLQWLQD------SDYNPICEICTKPLNEGECIRLTCYHVXHW--SCAESKYR 419
PKC+ YL W D Y + EI + C L Y++ ++ SC + +Y+
Sbjct: 345 PKCLSSKYLFWDPDFAFLSLGKYTALKEIDWVKTTQEHCPNLQYYYLGYYIHSCNKMRYK 404
Query: 420 ALPRTTAPAGYXCP 461
A R P+ CP
Sbjct: 405 AAYR---PSELLCP 415
>06_03_0347 + 19783824-19784348
Length = 174
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +3
Query: 324 CEICTKPLNEGECIRL--TCYHVXHWSCAESKYRALPRTTAPAGYXCPSCATXXFPPP 491
C +C + GE +R C H+ H C + + A T CP C T PPP
Sbjct: 102 CSVCLGAVQGGEAVRRLPACKHLYHVECIDM-WLASHAT-------CPICRTEVEPPP 151
>04_04_0994 +
29980076-29980441,29980900-29980998,29981075-29981612,
29982211-29982494,29983014-29983034,29983238-29983452,
29983538-29983691,29984089-29984220
Length = 602
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Frame = +3
Query: 264 PKCIIQSYLQWLQDSDYNPI------CEICTKPLNEGECIRLTCYHVXHWSCAESKYRAL 425
P II ++W D + C IC + ++L C+H C ++ +
Sbjct: 300 PDVIIPRMMRWNDDKCHEAFLRAIHDCMICFSEFPGTDFVKLPCHHFFCLKCMQTYCKMH 359
Query: 426 PRTTAPAGYXCPSCATXXFPPPNLV 500
+ CP PPN++
Sbjct: 360 VKEGTVVKLLCPDTKCGVVVPPNIL 384
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +3
Query: 441 PAGYXCPSCATXXFPPPNLVSPVADVLKEKLAGVNWARAGLGLPLLSEDQDLKGAASRRX 620
P + CP C PPP L + V+ V + R + +L+ + + A +
Sbjct: 95 PGRFSCPLCGAEIAPPPPLAAVVSVVAPPAAIPITSNRPAMTSEVLNGNSNQPTLAGQVQ 154
Query: 621 QSPLDTAYY 647
+S + YY
Sbjct: 155 KSIIPEQYY 163
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = +3
Query: 297 LQDSDYNPICEICTKPLNEGE----CIRLTC-YHVXHWSCAESKYRALPRTTAPAGYXCP 461
L D D +C++C P + + C C Y H SC ++ A + + CP
Sbjct: 484 LSDIDVRGLCKMCGNPEEKDKRFLVCGHTHCLYKYYHISCLKATQIASDKQLDKPCWYCP 543
Query: 462 SC 467
SC
Sbjct: 544 SC 545
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +3
Query: 315 NPICEICTKPLNEGECI---RLTCYHVXHWSCAESKYRALPRTTAPAGYXCPSCATXXFP 485
+P C IC P+ + + +C+ + H C +S + CP C FP
Sbjct: 106 SPPCLICFDPIRPSDPVWSCSASCFALLHLHCIQSWAHQSSSAAPSPTWGCPKC---RFP 162
Query: 486 PPNLVSPVA 512
P +P +
Sbjct: 163 YPKSQTPTS 171
>04_04_0058 - 22416949-22418196
Length = 415
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +3
Query: 324 CEICTKPLNEGECIRL--TCYHVXHWSCAESKYRA 422
C +C +GE +RL C H H C ++ RA
Sbjct: 202 CSVCLGEFQDGELVRLLPKCGHAFHVPCIDTWLRA 236
>04_04_0978 - 29856872-29858023
Length = 383
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +3
Query: 324 CEICTKPLNEGECIRL--TCYHVXHWSCAESKYRALPRTTAPAGYXCPSC-ATXXFPPPN 494
C +C ++GE +RL C H H C + T + CP C A F
Sbjct: 157 CSVCLGEFSDGESLRLLPRCSHAFHQQCID--------TWLKSHSNCPLCRANITFVTVG 208
Query: 495 LVSP 506
L SP
Sbjct: 209 LASP 212
>01_05_0598 +
23548081-23548186,23548277-23549508,23549621-23549652,
23549796-23550039
Length = 537
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 489 PNLVSPVADVLKEKLAGVNWARAGLGLPLLSEDQDLKGAAS 611
P+ +P A L+ A N+A A G +L+ +++ KGAA+
Sbjct: 131 PDGATPAAHRLEPSGAEYNYAAASKGAKVLAHNREAKGAAN 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,131,983
Number of Sequences: 37544
Number of extensions: 384231
Number of successful extensions: 863
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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