Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_G20
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0279 + 28119902-28120058,28120602-28120960,28121314-281213...    30   1.1  
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864...    29   2.0  
08_02_0350 + 16123139-16124041                                         28   4.6  
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579...    27   6.0  
08_01_1047 - 10616113-10616669,10616727-10616953,10617564-106176...    27   6.0  
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285...    27   8.0  

>01_06_0279 +
           28119902-28120058,28120602-28120960,28121314-28121393,
           28121476-28121527,28121621-28121662,28121750-28121828,
           28121991-28122022,28122102-28122170,28122412-28122528,
           28122617-28122667,28123175-28123318
          Length = 393

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 269 QETLRMTSFR-DKSALFGGRVKEGDPPTWP 355
           +E L+M   R DKSA FGGR    DP TWP
Sbjct: 255 KEGLKMKLPRYDKSA-FGGRGDRADPSTWP 283


>08_02_1097 +
           24284494-24284496,24284946-24285407,24285476-24286450,
           24286566-24286655,24286760-24287021,24287447-24287472
          Length = 605

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 289 RHPQGFLVIQKFAYEEPCHRNTKPNEARSDAED 191
           RH +  +VI +F YE+   R    +E+++DA+D
Sbjct: 178 RHGRNKVVIDEFGYEDLLRRRHTGHESQNDADD 210


>08_02_0350 + 16123139-16124041
          Length = 300

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 252 PMKNPVIGTPNQMKRGVMPKMAILYFDLLSFPLASVVP 139
           P   PV G  +++  GV+  + ++  DL  +P+A V+P
Sbjct: 197 PCLTPVAGLVDEVPNGVLFDVPMVVLDLDGWPMAHVLP 234


>11_03_0162 -
           10956997-10957323,10957390-10957568,10957823-10957922,
           10959333-10959397,10959480-10959572,10961062-10961607,
           10961627-10961678,10961753-10961884,10963049-10963210,
           10963532-10963582
          Length = 568

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 318 PNKADLSRKLVILKVSWSSRN 256
           PNK +LSR L+++   W +RN
Sbjct: 427 PNKTNLSRLLIVMWQLWKARN 447


>08_01_1047 -
           10616113-10616669,10616727-10616953,10617564-10617649,
           10617949-10618080,10618867-10618959
          Length = 364

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +2

Query: 80  VGILCASSFPP*ALRLFFLTGTTLASGKLNRSKYKMAIFGITPRFIWFGVPMTGFFIGKF 259
           + +  A +FP     +FF   + +   K + +     +F +    +WFG+ +   F+G F
Sbjct: 241 IALRTAFTFPGSVFAIFFFLNSLIWGQKSSGAVPFTTMFALV--LLWFGISVPLVFVGSF 298

Query: 260 L 262
           L
Sbjct: 299 L 299


>01_06_0848 +
           32426550-32426613,32427013-32427167,32428470-32428526,
           32428877-32428930,32429349-32429418,32429951-32432034
          Length = 827

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
 Frame = -3

Query: 339 SPSLTLPPNK---ADLSRKLVIL-KVSWSSRNLPMKNPVIGT-PNQM------KRGVMPK 193
           SPS++LP +    A LS  L     VS+ S NLP  NP+    PNQ       +  ++P 
Sbjct: 243 SPSMSLPSSSYHMAGLSHGLPYGGSVSFGSPNLPGSNPIQNDWPNQANPYAVDQFNLLPN 302

Query: 192 MAILYFDLLSFPLASVVPVKKNKRNAYGGKDDAHK 88
           M      L + P++S++  ++ +R A      +H+
Sbjct: 303 MLQKQISLPNSPMSSLLFSQQQQRLAQVQVQPSHQ 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,687,703
Number of Sequences: 37544
Number of extensions: 234244
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)