Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_G19
(526 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67) 31 0.58
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 30 1.0
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 29 2.3
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 29 2.3
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 28 4.1
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 28 4.1
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027) 28 5.4
SB_54062| Best HMM Match : WSC (HMM E-Value=4.6e-06) 27 7.2
SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3) 27 7.2
SB_6669| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.2) 27 7.2
SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1) 27 9.5
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 27 9.5
SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 27 9.5
>SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67)
Length = 237
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 209 GPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNC 328
GP+++P++ P P EE SP++TP TV R C
Sbjct: 197 GPEMIPKSTPTDPRTRNDTEE-SPKSTPGITVMESRRNTC 235
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 294 GGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEE 178
G CG +C+ C G CG ++G C P ++ E
Sbjct: 97 GRYYCGRQVLSCSCCDGFCGTSNGCNCPPCQKLDQEERE 135
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 158 PECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 334
PE +SQ + + P P ARPQ P ++ SP P PT+ +++ P
Sbjct: 864 PEPASQMNSQFNDQPNLAPYE-PFARPQQPPAPMPPQQQSPYQPPAPTMQQPQLQAFAP 921
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 167 PHPRSSQCSS-DGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRM 319
P S C+ P+V+ R LPT+T+ E SP+ TP PT R+
Sbjct: 469 PREHQSPCTPVPAYTTPRVLHSPRTPLPTYTSPREHHSPR-TPLPTYTSPRV 519
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 152 HHPECPHPRSSQCSSDGEVGPQVVPEAR--PQLPTH 253
+HP CP P +C E+ P+++PE + Q+P H
Sbjct: 319 NHP-CPLPCFEECKPCTELLPKIIPECQHEQQVPCH 353
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 224 PEARPQLPTHTAQVEEASPQATPPPTVDPDRMK 322
P+ + P T + PQ TP PT +P R K
Sbjct: 357 PKHTTEPPRTTPEPTTEPPQTTPEPTTEPSRTK 389
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 318 IRSGSTVGGGVA-CGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSG 157
++ T G G CG TC G CG+ G TCG + +GCG G
Sbjct: 223 VKGCGTCGKGCGTCGKRCRTCYAGCGTCGKGWG-TCGKGCRT----SGKGCGTCG 272
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -2
Query: 303 TVGGGVA-CGDASSTCAVCVGNCGRASGTTCG 211
T G G CG TC G CG+ G TCG
Sbjct: 263 TSGKGCGTCGKGCGTCGKGCGTCGKGCG-TCG 293
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 146 TSHHPECPHPRSSQCSSDGEVGPQVVPEARPQL 244
TS HP+ PHPRS GE P V +A ++
Sbjct: 287 TSSHPQ-PHPRSRSFDYSGEGRPSVGSDASGEI 318
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/54 (27%), Positives = 19/54 (35%)
Frame = -2
Query: 309 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSGWCE 148
G G G G+ ++ G SGTT G + E G SG E
Sbjct: 616 GVNTGSGTTTGEVNTGSGTTTGGMNTGSGTTTGGVNTGSGTTSESGTTTSGTTE 669
>SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027)
Length = 384
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = -2
Query: 288 VACGDASSTCAVCVGNCGR---ASGTTCGPTSPSEEHWEERGCGHSGWC 151
+ G C+V GNCG G++C T + CGH WC
Sbjct: 59 IVYGQEYKLCSVTTGNCGTLFCMRGSSCVNTR-GMPPVDGTPCGHRKWC 106
>SB_54062| Best HMM Match : WSC (HMM E-Value=4.6e-06)
Length = 185
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 273 ASSTCAVCVGNCGRASGTTCGPTSPSEEH 187
A TC V G G+A+ C P S EH
Sbjct: 94 AVCTCGVSFGRYGKANPKDCNPKCSSGEH 122
>SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)
Length = 515
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 229 LRDHLRPYLPIRRTLGRTRMWALWVVRSHLLPRLPQEASS--PVSSY*RQ 86
LR H +P LP R L +++R H P+LP A+ V SY R+
Sbjct: 424 LRQHRKPKLPFRANL--ALKVTSYILRQHRKPKLPFRANEALKVLSYTRR 471
>SB_6669| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.2)
Length = 523
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +2
Query: 146 TSHHPEC-PHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPD 313
T HH C P + + E+G Q P R L T QV PP VD +
Sbjct: 149 TYHHYPCIPAEKPIEEWRPSELGTQTRPSRRRYLATRPCQVVCCGDYGQVPPWVDKE 205
>SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)
Length = 456
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 158 PECPHPRSSQCSSDGEVGPQV 220
P+CP+P CS+D +G V
Sbjct: 146 PKCPNPSDPYCSTDDMIGRNV 166
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 212 PQVVPEARPQLPTHTAQVEEASPQATPPPTVDP 310
PQ PQ H Q+ + Q PPPT P
Sbjct: 147 PQTAAVTLPQQIQHPTQLSQQPQQPDPPPTHKP 179
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 236 PQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 334
P L + + E ++P PPPT+ P KP
Sbjct: 3136 PSLSSSDSTQEGSTPDVLPPPTLPPGSNTTSKP 3168
>SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 248 THTAQVEEASPQATPPPTVD 307
T T+ EEA+P TPP TV+
Sbjct: 580 TETSSEEEAAPTKTPPSTVN 599
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 173 PRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRM 319
P+ + P E RPQ P+ +AS + P PT+ ++M
Sbjct: 815 PQGTSAQPKPSQQPNSTSEPRPQQPSQPKSSAQASYKEPPKPTLAGEKM 863
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,386,441
Number of Sequences: 59808
Number of extensions: 189044
Number of successful extensions: 852
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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