Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_G13
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 36 4e-05
03_03_0009 - 13691820-13691900,13693576-13693719 44 9e-05
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 44 2e-04
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 30 1.5
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 29 2.7
07_03_1788 + 29523216-29524867,29525048-29525075 28 8.3
05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054... 28 8.3
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 28 8.3
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 35.9 bits (79), Expect(2) = 4e-05
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 235 EYKSGDFIFAKVKGYPAWPA 294
++K GD + AK+KG+PAWPA
Sbjct: 22 QWKVGDLVLAKMKGFPAWPA 41
Score = 29.1 bits (62), Expect(2) = 4e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 316 KKYFVYFYGTGEIANLPPNMIFDYAENKDKFL--TKTVKRRDFNDGVKQI 459
KK VYFYGT +IA + + E K K L + K DF VK+I
Sbjct: 81 KKLLVYFYGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKGADFVRAVKEI 130
>03_03_0009 - 13691820-13691900,13693576-13693719
Length = 74
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Frame = +1
Query: 235 EYKSGDFIFAKVKGYPAWPARV-------QRLNGKKYFVYFYGTGEI 354
++K GD + AK+KG+PAWPA + Q KK VYFYGT ++
Sbjct: 28 QWKVGDLVLAKMKGFPAWPAMISEPEQWGQTSVKKKILVYFYGTKQM 74
>08_01_0003 +
30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Frame = +1
Query: 214 KMGKKVREYKSGDFIFAKVKGYPAWPARVQRLNG-------KKYFVYFYGTGEI 354
K K + + GD + AKVKGYP WPA+V + +K FV F+GT EI
Sbjct: 10 KAHKWTTQPQLGDLVLAKVKGYPPWPAKVSKPEDWDQMPVPRKVFVVFFGTREI 63
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +1
Query: 187 HGGSGIVILKMGKKVREYKSGDFIFAKVKGYPAWPARVQRLNGKKYFVYFYGTGEIANLP 366
+GG+ L + K R + +++FA + GY PA VQ G Y YF G G IA
Sbjct: 551 NGGAYPPDLSLITKAR-HNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPG-GAIA--M 606
Query: 367 PNMIFDYA 390
P M+ D A
Sbjct: 607 PKMLIDGA 614
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 193 GSGIVILKMGKKV--REYKSGDFIFAKVKGYPAWPARV 300
GSG ++ G R + GD ++ KVK +P WP V
Sbjct: 27 GSGAIVHPGGGGAWPRGVRFGDMVWGKVKSHPWWPGHV 64
>07_03_1788 + 29523216-29524867,29525048-29525075
Length = 559
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 238 YKSGDFIFAKVKGYPAWPARV--QRLNGKKYFVYFYGTGEIA 357
+ GD ++ K +PAWP V G + V F+G +A
Sbjct: 61 FAPGDLVWGKKLSHPAWPGEVISAAPTGAQLLVSFFGDKALA 102
>05_07_0073 -
27504169-27504882,27504989-27505161,27505302-27505485,
27505604-27505675,27506173-27506733,27506846-27507145
Length = 667
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 290 GHAGYPLTLANIKSPDLYSLTFLPIFSITMPLPPCSMLS 174
GH+ + T++ SPD+ S+ F+PI S+ + C L+
Sbjct: 328 GHSNWLSTISG--SPDVISMAFVPITSLLTGVRGCGFLN 364
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 27.9 bits (59), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 235 EYKSGDFIFAKVKGYPAWPARV 300
E++ D ++ KVK +P WP +
Sbjct: 247 EFRVSDLVWGKVKSHPWWPGEI 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,714,274
Number of Sequences: 37544
Number of extensions: 251861
Number of successful extensions: 564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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