Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_G09
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    71   8e-14
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   3.1  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   7.2  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.5  

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 71.3 bits (167), Expect = 8e-14
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = +2

Query: 293 AEKKAKMADRTNDKEPTWVLQG--KKLLKVREFKGKVYVDIREFYEKNGELLPGKKGISL 466
           A  K    ++ +D E  W L    KK + + EF+G  YV IRE+YEK+G++LPGKKGI+L
Sbjct: 13  ASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIAL 72

Query: 467 TPEQWRKLLSIGEEVNETV 523
              +W+KL  +  EV++++
Sbjct: 73  NINEWKKLKQLIHEVDDSL 91


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 110  HINSTLWYCRLSLVRFISY 166
            HINS + YCRL+  R   Y
Sbjct: 1554 HINSWIGYCRLTRTRITGY 1572


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 451 FTW*KFTILFIKFSYVYIYFSFEFS 377
           + W K   +F+KFS + + FS  FS
Sbjct: 49  YQWFKHQSVFLKFSLIVLLFSLMFS 73


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 455 GISLTPEQWRKLLSIGEEVNETVSXMC 535
           GIS  PE  R L++IG++  E +  MC
Sbjct: 195 GISFLPESPRYLIAIGKD-EEALDIMC 220


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 471 GVRLIPFLPGKSSPFFS*NSLMSTYTFPLNS--RTFSNFLPCNTHVGSLSL 325
           G+ + P  PG+ +PF     +++ YT  + S     S  L   +H+G++ L
Sbjct: 341 GMSVCPLYPGEENPFKRFKIMLTVYTGKVISVEVQLSENLYDTSHIGNIPL 391


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 456 PFLPGKSSPFFS*NSLMSTYTFPLNSRTFSN 364
           P     SSP  S +SL+STY+  L++ T S+
Sbjct: 690 PVASSSSSPIPSSSSLVSTYSASLSNITHSS 720


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 243 IVLVVTVMTALKIGTLLLKKRQKWQTGL 326
           ++++V+ +T ++   L+LKK   W+  L
Sbjct: 733 VIILVSKITGVQSPPLILKKHDNWKVSL 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,326
Number of Sequences: 5004
Number of extensions: 30825
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)