Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_G06
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   4.1  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   7.2  
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    26   7.2  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 329 IEHHVRQGFVPFDKRC 282
           I HHVR+ + PF+ RC
Sbjct: 299 IYHHVRRAYNPFEDRC 314


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 546 GSRQSAERSRRVPRIFRCRCWLFE 475
           GS    E    +  +FRCRC +F+
Sbjct: 71  GSNDDEEDDLDITTLFRCRCMIFD 94


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 550 SWKSSERRTFETRPP 506
           +WK  + +TFET+PP
Sbjct: 357 NWKDVKSKTFETKPP 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,893
Number of Sequences: 5004
Number of extensions: 66699
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)