Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_G05
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W2E8 Cluster: CG10320-PA; n=7; Endopterygota|Rep: CG1...    60   4e-08
UniRef50_Q18095 Cluster: Putative uncharacterized protein; n=2; ...    49   1e-04
UniRef50_Q4SNW8 Cluster: Chromosome 15 SCAF14542, whole genome s...    40   0.061
UniRef50_O43676 Cluster: NADH dehydrogenase [ubiquinone] 1 beta ...    39   0.11 
UniRef50_UPI0000586C08 Cluster: PREDICTED: similar to NADH dehyd...    39   0.14 
UniRef50_UPI00015B52DA Cluster: PREDICTED: similar to NADH dehyd...    38   0.25 
UniRef50_Q09JJ9 Cluster: NADH-dehydrogenase (Ubiquinone) 1 beta-...    35   2.3  
UniRef50_A0DUI6 Cluster: Chromosome undetermined scaffold_64, wh...    34   3.0  

>UniRef50_Q9W2E8 Cluster: CG10320-PA; n=7; Endopterygota|Rep:
           CG10320-PA - Drosophila melanogaster (Fruit fly)
          Length = 110

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = +2

Query: 296 MGGXGHGPPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           MGG  HG PYTVPH S + V+ +PQL E+++AL  +GLKDPW+R
Sbjct: 1   MGGH-HGEPYTVPHASTYKVESVPQLVEVKEALGRQGLKDPWLR 43


>UniRef50_Q18095 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 103

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +2

Query: 296 MGGXGHGPPYTVPHYSQFT-VKGIPQLDELEKALAVKGLKDPWIR 427
           MGG GH  P+ +P+YS ++  +  PQL + EK LA  GLKDPWIR
Sbjct: 1   MGG-GHHEPFKIPNYSIYSNFRDFPQLAQHEKRLAQIGLKDPWIR 44


>UniRef50_Q4SNW8 Cluster: Chromosome 15 SCAF14542, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 15
           SCAF14542, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 84

 Score = 39.9 bits (89), Expect = 0.061
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 296 MGGX-GHGPPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           MGG  GHG   ++P + Q+  +G P L+  +K LA +GLKDPW R
Sbjct: 1   MGGDHGHGK-ISMPDWRQWKTEGTP-LEFTQKRLAARGLKDPWAR 43


>UniRef50_O43676 Cluster: NADH dehydrogenase [ubiquinone] 1 beta
           subcomplex subunit 3; n=23; Euteleostomi|Rep: NADH
           dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 -
           Homo sapiens (Human)
          Length = 98

 Score = 39.1 bits (87), Expect = 0.11
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302 GXGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           G  HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


>UniRef50_UPI0000586C08 Cluster: PREDICTED: similar to NADH
           dehydrogenase, putative; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to NADH
           dehydrogenase, putative - Strongylocentrotus purpuratus
          Length = 89

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 13/33 (39%), Positives = 25/33 (75%)
 Frame = +2

Query: 329 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           +P +  + V+ +P+L  +++ LA++GLKDPW+R
Sbjct: 8   IPDWRIYKVEDVPKLKAVQEKLALRGLKDPWLR 40


>UniRef50_UPI00015B52DA Cluster: PREDICTED: similar to NADH
           dehydrogenase, putative; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to NADH dehydrogenase, putative -
           Nasonia vitripennis
          Length = 109

 Score = 37.9 bits (84), Expect = 0.25
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +2

Query: 296 MGGXGHGPPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           MGG  H     VP  S + V+    L ++++ LA KGLKDPW+R
Sbjct: 1   MGGHHHVKLPNVPDPSIYKVEDAKDLLKVQERLAKKGLKDPWMR 44


>UniRef50_Q09JJ9 Cluster: NADH-dehydrogenase (Ubiquinone) 1
           beta-subcomplex 3; n=1; Argas monolakensis|Rep:
           NADH-dehydrogenase (Ubiquinone) 1 beta-subcomplex 3 -
           Argas monolakensis
          Length = 102

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           +P    + V+ +P+L ++++ LA  GLKDPW+R
Sbjct: 13  IPDPKIYKVEDVPRLMQVKRELASYGLKDPWLR 45


>UniRef50_A0DUI6 Cluster: Chromosome undetermined scaffold_64, whole
           genome shotgun sequence; n=3; Oligohymenophorea|Rep:
           Chromosome undetermined scaffold_64, whole genome
           shotgun sequence - Paramecium tetraurelia
          Length = 314

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 257 YYDEDKG-LFSVCRMGGXGHGPPY--TVPHYSQFTVKGIPQLDELEKALAVKGLKDPWI 424
           +YDED   LFS+ + G      PY   + + ++  +KG+  +D  ++    K LK PW+
Sbjct: 210 FYDEDNDKLFSMIKTGNFAFPSPYWDQISNEAKELIKGLLTIDPAKRLTTDKILKHPWL 268


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,086,648
Number of Sequences: 1657284
Number of extensions: 10584906
Number of successful extensions: 17135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17134
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)