Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_G05
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   6.2  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   6.2  

>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 263 DEDKGLFSVCRMGGXGHGPPYTVPHYSQFTV 355
           D +KGL   C  G  G  P    PHY    V
Sbjct: 26  DLEKGLLPKCNTGNGGTTPCSEPPHYDSDAV 56


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 436 N*LPDP---WIFKSFYS*GLFKLIQLWDTFDSKLGVVRHCVRGP 314
           N LP P   W   S    GL++++  +DT +++ G      +GP
Sbjct: 76  NGLPGPYVKWFLNSVGPDGLYRMVSAFDTKEAQAGCTFGYTKGP 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,286
Number of Sequences: 5004
Number of extensions: 46147
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)