Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_G05
         (717 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456924-1|CAG33205.1|   98|Homo sapiens NDUFB3 protein.               39   0.016
BC018183-1|AAH18183.1|   98|Homo sapiens NADH dehydrogenase (ubi...    39   0.016
AF047183-1|AAC04268.1|   98|Homo sapiens NADH-ubiquinone oxidore...    39   0.016
AF035839-1|AAC15590.1|   98|Homo sapiens NADH:ubiquinone oxidore...    39   0.016
AC007272-1|AAX88972.1|   98|Homo sapiens unknown protein.              39   0.016

>CR456924-1|CAG33205.1|   98|Homo sapiens NDUFB3 protein.
          Length = 98

 Score = 39.1 bits (87), Expect = 0.016
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302 GXGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           G  HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


>BC018183-1|AAH18183.1|   98|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 beta subcomplex, 3, 12kDa protein.
          Length = 98

 Score = 39.1 bits (87), Expect = 0.016
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302 GXGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           G  HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


>AF047183-1|AAC04268.1|   98|Homo sapiens NADH-ubiquinone
           oxidoreductase subunit CI-B12 protein.
          Length = 98

 Score = 39.1 bits (87), Expect = 0.016
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302 GXGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           G  HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


>AF035839-1|AAC15590.1|   98|Homo sapiens NADH:ubiquinone
           oxidoreductase B12 subunit protein.
          Length = 98

 Score = 39.1 bits (87), Expect = 0.016
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302 GXGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           G  HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


>AC007272-1|AAX88972.1|   98|Homo sapiens unknown protein.
          Length = 98

 Score = 39.1 bits (87), Expect = 0.016
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302 GXGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 427
           G  HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,199,925
Number of Sequences: 237096
Number of extensions: 1748935
Number of successful extensions: 5913
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5913
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)