Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_G01
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    27   2.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   2.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   2.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   6.3  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   8.3  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   8.3  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 142 NLFEMRVN-GVIIFTFLRFSSRYHSKKQKFDFANSTVGILKTTTHRP 5
           N+++  ++ G+ I  FLRF+++Y S+        +T G+     +RP
Sbjct: 135 NIWQAEIDAGMEIIDFLRFNTKYASELYASQPPENTPGVWNRMEYRP 181


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 201 ENLPFDIHNRYKLTLYFILYAGSGLSAPYL 290
           E   F+++N Y LTL+ I++      AP++
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFI 501


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 250 SSYMRALDYQHPISSPVTSF*RSNSSCRDPLLVLGLS**KTVHYESLWMSKINYM 414
           +S    L Y  PI+SP TS    N    D +    LS     + +S   S INY+
Sbjct: 178 TSVSSTLTYHTPIASPTTSSNSDNEYTVDVITSSSLSSFVITNVDSTTTSVINYI 232


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 236 LVTVVNVEG*ILARNTAVRMVSHEIRYHISAQFV 135
           L+T  NV   +L R+  V ++  E  YHI  Q +
Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 99  NVKMITPLTRISNKLGRN 152
           NVK +TP  RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 78  YLLENRRNVKMITPLTRISNKLGRNVVTN 164
           YL   R   +  TPL+ ISN L  N V N
Sbjct: 214 YLESLREKRRTYTPLSEISNGLNSNGVEN 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,533
Number of Sequences: 5004
Number of extensions: 35305
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)