Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_G01
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853...    28   4.7  
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151...    27   8.3  
03_05_0161 + 21400580-21401695                                         27   8.3  
03_03_0041 - 14007687-14009381                                         27   8.3  

>07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,
            8530533-8530878,8530964-8531101,8531197-8531322,
            8531422-8531634,8531721-8531863,8531891-8532009,
            8532099-8532295,8532379-8532729,8532811-8533395
          Length = 1143

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 178  WFLTKFVTTFLPNLFEMRVNGVII 107
            WF++ F+  F+  + EMR +GV I
Sbjct: 957  WFMSLFICIFVTGILEMRWSGVAI 980


>03_06_0259 +
           32712976-32714335,32714454-32714587,32714904-32715144,
           32715254-32715462,32715522-32715583,32715690-32715801,
           32715916-32716208,32716400-32716520
          Length = 843

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 141 LGRNVVTNFV-RNHSNGGIPGENLPFDIHNR 230
           LGR VVT  + RN   GG+PGE   F +  R
Sbjct: 244 LGRKVVTVVLSRNRFTGGLPGEITSFYLLER 274


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -2

Query: 228 GCECRRVDS-RQEYRR*NGFSRNSLPHFCPICLRCESMG*SSLRFYDSRVGITAKNRSSI 52
           G  C R DS   ++   N +S +   HFC  C R  + G  +LR      G     RS  
Sbjct: 47  GLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKG-GALRNVPVGGGCRKNKRSRS 105

Query: 51  LQIAQ*VS*KLPLI 10
              A  +S  LP +
Sbjct: 106 AAAASRLSLNLPTV 119


>03_03_0041 - 14007687-14009381
          Length = 564

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 230 LQADIVFHPICGLWTISTLSHHPSPA 307
           L  D++FHP C   T+S L   P P+
Sbjct: 59  LPGDLLFHPACVRLTLSHLLPSPDPS 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,820,564
Number of Sequences: 37544
Number of extensions: 212034
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)