Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F22
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.02c |||diphthamide biosynthesis protein Dph3 |Schizosac...    71   1e-13
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    28   0.95 
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   6.7  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   8.9  

>SPAC8F11.02c |||diphthamide biosynthesis protein Dph3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 79

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 28/40 (70%), Positives = 35/40 (87%)
 Frame = +1

Query: 178 PCPCGDRFQISKEELMAGEEVATCPSCSLVVKVIYDLEKF 297
           PCPCGDRF+IS E+L  GE+VA CPSCSL+V+VIYD ++F
Sbjct: 24  PCPCGDRFEISLEDLQLGEDVARCPSCSLIVRVIYDEDEF 63


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 22  NMHDACGRYRIEFAGI*NYFNFVFIN 99
           N+ D C + RIE+A + NY NF F+N
Sbjct: 103 NLLDDCFKNRIEYAKLQNY-NFEFVN 127


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 302 ALNFSRS*ITLTTREQLGHVATSSPAINSSLLI*NLSPHGH 180
           AL+F+ +   L  +E+LG     SP++   L   NLS   H
Sbjct: 13  ALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKGNLSDDSH 53


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 202 QISKEELMAGEEVATCPSCSLVVKV 276
           ++ +E    G  + TC SC L+VK+
Sbjct: 54  RVRRELRTIGTPLETCVSCKLIVKI 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,619
Number of Sequences: 5004
Number of extensions: 21377
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)