Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F22
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68218-1|CAA92471.1|   80|Caenorhabditis elegans Hypothetical pr...    69   2e-12
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    29   2.0  

>Z68218-1|CAA92471.1|   80|Caenorhabditis elegans Hypothetical
           protein K01H12.1 protein.
          Length = 80

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/64 (46%), Positives = 38/64 (59%)
 Frame = +1

Query: 106 MTIFHXXXXXXXXXXXXXXXXXXXPCPCGDRFQISKEELMAGEEVATCPSCSLVVKVIYD 285
           M++FH                   PCPCGDRF+I +E L  GE+VA CPSCSL+++VIYD
Sbjct: 1   MSVFHDEVEIEDFEFDEEKDVYHYPCPCGDRFEIPREMLEMGEDVAQCPSCSLLIRVIYD 60

Query: 286 LEKF 297
            E F
Sbjct: 61  PEDF 64


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 181 CPCG----DRFQISKEELMAGEEVATCPSCSLVVKVIYDLEKFKAESEEIVR 324
           CPC     D  + + E+L   E +  CP C    K+ YD  +F    EE VR
Sbjct: 208 CPCWLPRFDENENTLEDLKIEESI--CPKCEKSRKIYYDHVEFGTGREEAVR 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,334,561
Number of Sequences: 27780
Number of extensions: 117362
Number of successful extensions: 243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)