Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_F19
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 27 2.2
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 2.9
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 26 3.8
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 25 5.0
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 6.6
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 25 6.6
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 25 6.6
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 25 8.7
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 25 8.7
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 8.7
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 2.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 391 FEILFWKRMIYLFTLYIS 444
F +FW MIY+F +Y++
Sbjct: 256 FRWIFWVNMIYMFVMYLT 273
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 396 NSFLETN-DLFIYFVHILKLLNLSNEYINVNLS 491
+SFL T+ D F+ H++ + +LSN Y++ +L+
Sbjct: 468 SSFLVTDYDFFLELKHLIDISSLSNLYLDSSLN 500
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Frame = +2
Query: 56 QAIKVGTKTVKPVLSSSHAEARNXVLS------LYKA----WYRQIPYIVKDY 184
+AIKV +T P +++ EA + +++ LY+ W+RQIPY + +
Sbjct: 142 EAIKVRVQTSNPRFANTTREAWSKIVTNEGFGTLYRGLAPLWFRQIPYTMMKF 194
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 5.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -2
Query: 427 INKSFVSRKEFRKEIFWFRFFCWF--EVSHNVPLLFPYVHRL----FQLH-LTLNNQH 275
INK SR FR ++ F+F W E H+ + PY + F H +TL + H
Sbjct: 58 INKRTCSRYSFRDKLTSFQFLSWLISEDVHSNLEISPYYTKALPQGFSFHPVTLTSDH 115
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.0 bits (52), Expect = 6.6
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -2
Query: 346 HNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFFQFLSTLCF*LGNVIIL 176
+N LL + H + + NN + S I FVLN+ F L+T+C LGN++ L
Sbjct: 1586 YNAYLLDFFTHGSVDMLIEQNN--LKQSEI--WFVLND-FSLVLATICSCLGNLLNL 1637
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +3
Query: 336 GTLWLTSNQQKNLNQKISFRNSFLETNDLFIYFVHILKLLNLSNEYINVNL 488
G +WL+ KN+ + + FL+ + + H ++S +Y NL
Sbjct: 109 GNIWLSYEGAKNVETGVWIKEMFLDFYGILNFKGHSEPFYSISEKYSFCNL 159
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 388 PFEILFWKRMIYLFTLYIS 444
PF +LF + +++L TLY+S
Sbjct: 320 PFVLLFCEPIVFLLTLYMS 338
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 465 YLGLTISRYVQSK*INHSFPEKNFERKF 382
Y+ I+RY IN+S+P +N E F
Sbjct: 97 YMERLIARYPARPSINNSYPNRNAEHFF 124
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.6 bits (51), Expect = 8.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 98 SSSHAEARNXVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKEL-FIKNKHVTDIRV 268
+ +H N +LSL K+W + I+ D +C + + L +IK K V++ ++
Sbjct: 417 NDNHETCVNDILSLGKSWILKNGGILSPSDCTYVSPECSLQGESLEWIKGKQVSNCKL 474
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = -2
Query: 361 WFEVSHNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFF 224
W E+ + + RL+ L+ HI S VL EE++
Sbjct: 102 WIELWDLESRTWDLIQRLYSFRLSEQQGHIQSHAFSSRAVLEEEYY 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,933
Number of Sequences: 5004
Number of extensions: 41099
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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