Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F19
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)             78   4e-15
SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23)                   31   0.55 
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)                     29   1.7  
SB_9704| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1)                    29   2.9  
SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)                   28   3.9  
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)                     28   5.1  
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 27   6.8  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.0  
SB_37642| Best HMM Match : fn3 (HMM E-Value=0)                         27   9.0  

>SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)
          Length = 487

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 36/74 (48%), Positives = 53/74 (71%)
 Frame = +2

Query: 68  VGTKTVKPVLSSSHAEARNXVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIKNK 247
           VG    KP+LS++ AEAR  V +LY+AW+R+IP+ V+ + +  S    R K++E F+KN 
Sbjct: 10  VGRAVAKPLLSTTPAEARRRVFNLYRAWWREIPHTVQAFALDISVKSGRNKVREEFMKNA 69

Query: 248 HVTDIRVIDMLVIK 289
           +V D+R+IDMLVIK
Sbjct: 70  NVKDLRIIDMLVIK 83


>SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23)
          Length = 235

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +2

Query: 188 IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPT- 364
           + K+  Q RE   +  I+ K+ T +  I   V+    +LKE V  W++   +    +PT 
Sbjct: 146 LDKARTQLREHPFDKDIQRKYETTLAKIKTTVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 205

Query: 365 ----EEPKPKNFLSKFF 403
               E+PK      K F
Sbjct: 206 DDISEDPKISKVKQKLF 222


>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
          Length = 685

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 188 IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTE 367
           + K+  Q RE   +  I+ K+ T +  I   V+    +LKE V  W++   +    +PT 
Sbjct: 597 LDKARTQLREHPFDKDIQRKYETTLAKIKTKVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 656

Query: 368 E 370
           +
Sbjct: 657 D 657


>SB_9704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 188 IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTE 367
           + K+  Q RE   +  I+ K+ T +  I   V+    +LKE V  W++   +    +PT 
Sbjct: 50  LDKARTQLREHPFDKDIQRKYETTLAKIKTKVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 109

Query: 368 E 370
           +
Sbjct: 110 D 110


>SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 188  IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTE 367
            + K+  Q RE   +  I+ K+ T +  I   V+    +LKE V  W++   +    +PT 
Sbjct: 1194 LDKARTQLREHPFDKDIQRKYETTLAKIKTKVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 1253

Query: 368  E 370
            +
Sbjct: 1254 D 1254


>SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1)
          Length = 715

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +2

Query: 209 CREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTEEPKPKNF 388
           CR++ +E   K KH T + V+   VI G   ++E +  ++Q+   +     TE    +N 
Sbjct: 64  CRQESREFAKKTKHSTRVGVVP--VISG-ARIQEDLKHYQQQTETLESLLATENHNNENL 120

Query: 389 LSK 397
           ++K
Sbjct: 121 MNK 123


>SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)
          Length = 888

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +2

Query: 188 IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTE 367
           + K+  Q RE   +  I+ K+ T +  +   V+    +LKE V  W++   +    +PT 
Sbjct: 767 LDKARTQLREHPFDNDIQRKYETTLARVKTKVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 826

Query: 368 E 370
           +
Sbjct: 827 D 827


>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
          Length = 1176

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 185 DIPKSEAQCREKLKELFIKNKHVTDIR-VIDMLVIKGQMELKESVNIWKQKGHIMAYFK 358
           ++P+SE   +E+L+ +  KN+ +++   VID  + + Q+E +        K  + A FK
Sbjct: 266 NLPRSETTNQERLRAIDRKNEELSERNSVIDETLEENQLERENLEERMSLKDRVKAIFK 324


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 212 DIVLLTWECHNPSLYRGSDDTMLCKDSEXYSELQHET 102
           DI+L +  C +PS      +  L   SE  SE ++ET
Sbjct: 786 DIILTSSSCSDPSANSADSEKCLEAPSESQSETEYET 822


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 102  DXSTGFTVFVPTFIACLARHFQSESXCDSI 13
            D   GFT   P +  C AR  + E  CD I
Sbjct: 5269 DPCVGFTCVAPPYSYCKARDGRPECVCDGI 5298


>SB_37642| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 500

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = +2

Query: 59  AIKVGTKTVKPVLSSSHAEARNXVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFI 238
           A    + T+K    S    A+N V+  YK +YR I  + + Y+I    A     L  L +
Sbjct: 281 AYNTSSTTIKVNWGSVPQGAQNGVILGYKVFYRHIDKLSEYYNISVVSAP-EMSLTVLGL 339

Query: 239 KNKHVTDIRVIDMLVIKGQMELKESV 316
           K   + +++ +    IKG   L   V
Sbjct: 340 KKYGLYEVKAL-AFTIKGDGNLSSPV 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,123,776
Number of Sequences: 59808
Number of extensions: 271436
Number of successful extensions: 781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)