Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_F15
(410 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VH69 Cluster: 40S ribosomal protein S29; n=31; Eukary... 117 8e-26
UniRef50_P62273 Cluster: 40S ribosomal protein S29; n=66; Eukary... 106 2e-22
UniRef50_P90983 Cluster: Ribosomal protein, small subunit protei... 100 2e-20
UniRef50_UPI0000E202DC Cluster: PREDICTED: similar to ribosomal ... 94 9e-19
UniRef50_Q680P8 Cluster: 40S ribosomal protein S29; n=4; Eukaryo... 92 3e-18
UniRef50_A1DNZ6 Cluster: 40S ribosomal protein S29, putative; n=... 89 4e-17
UniRef50_O74329 Cluster: 40S ribosomal protein S29; n=12; cellul... 86 3e-16
UniRef50_Q6CFB0 Cluster: Similar to sp|P41057 Saccharomyces cere... 84 9e-16
UniRef50_Q1DQB3 Cluster: Predicted protein; n=4; Pezizomycotina|... 82 4e-15
UniRef50_Q8INN0 Cluster: CG8495-PC, isoform C; n=1; Drosophila m... 79 3e-14
UniRef50_Q4Q817 Cluster: Ribosomal protein s29, putative; n=5; T... 71 1e-11
UniRef50_P54110 Cluster: 30S ribosomal protein S14P; n=7; Methan... 69 3e-11
UniRef50_UPI0001554864 Cluster: PREDICTED: similar to ribosomal ... 68 9e-11
UniRef50_Q22MB0 Cluster: Putative uncharacterized protein; n=1; ... 66 3e-10
UniRef50_O28368 Cluster: 30S ribosomal protein S14P; n=2; cellul... 65 5e-10
UniRef50_Q013Q2 Cluster: RS29_CULQU 40S ribosomal protein S29; n... 60 2e-08
UniRef50_Q8SS73 Cluster: 40S ribosomal protein S29; n=1; Encepha... 60 2e-08
UniRef50_O05635 Cluster: 30S ribosomal protein S14P; n=11; Therm... 59 3e-08
UniRef50_Q74NE6 Cluster: 30S ribosomal protein S14P; n=2; Archae... 59 3e-08
UniRef50_Q97BW2 Cluster: 30S ribosomal protein S14P; n=12; Archa... 54 1e-06
UniRef50_P62012 Cluster: 30S ribosomal protein S14P; n=10; Archa... 53 3e-06
UniRef50_Q7R0P0 Cluster: GLP_79_44835_45248; n=1; Giardia lambli... 52 6e-06
UniRef50_Q9HPC0 Cluster: 30S ribosomal protein S14P; n=8; Euryar... 50 1e-05
UniRef50_P26816 Cluster: 30S ribosomal protein S14P; n=3; Haloba... 47 1e-04
UniRef50_A2ZKX8 Cluster: Putative uncharacterized protein; n=3; ... 43 0.002
UniRef50_Q8XHT6 Cluster: 30S ribosomal protein S14 type Z; n=83;... 40 0.026
UniRef50_UPI000023DF20 Cluster: hypothetical protein FG07181.1; ... 37 0.18
UniRef50_Q7NEG5 Cluster: 30S ribosomal protein S14 type Z; n=3; ... 33 2.3
UniRef50_UPI0000F32986 Cluster: UPI0000F32986 related cluster; n... 32 5.2
UniRef50_Q9GTH4 Cluster: Nuclear receptor NHR-43; n=3; Caenorhab... 31 6.9
UniRef50_Q3IPC2 Cluster: Predicted helicase; n=2; Halobacteriace... 31 6.9
UniRef50_P95911 Cluster: Orf c01013 protein; n=1; Sulfolobus sol... 31 6.9
>UniRef50_Q9VH69 Cluster: 40S ribosomal protein S29; n=31;
Eukaryota|Rep: 40S ribosomal protein S29 - Drosophila
melanogaster (Fruit fly)
Length = 56
Score = 117 bits (282), Expect = 8e-26
Identities = 49/56 (87%), Positives = 51/56 (91%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 277
MG A WYSHPR YGQGSR CR+CSNRHGLIRKYGLNICRQCFREYA+DIGFKKLD
Sbjct: 1 MGFATLWYSHPRKYGQGSRCCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 56
>UniRef50_P62273 Cluster: 40S ribosomal protein S29; n=66;
Eukaryota|Rep: 40S ribosomal protein S29 - Homo sapiens
(Human)
Length = 56
Score = 106 bits (254), Expect = 2e-22
Identities = 44/56 (78%), Positives = 49/56 (87%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 277
MGH ++SHPR +GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>UniRef50_P90983 Cluster: Ribosomal protein, small subunit protein
29; n=18; Eukaryota|Rep: Ribosomal protein, small
subunit protein 29 - Caenorhabditis elegans
Length = 56
Score = 99.5 bits (237), Expect = 2e-20
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 277
MG N W+SHPR +G GSRSCR C+ HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>UniRef50_UPI0000E202DC Cluster: PREDICTED: similar to ribosomal
protein S29; n=4; Theria|Rep: PREDICTED: similar to
ribosomal protein S29 - Pan troglodytes
Length = 56
Score = 94.3 bits (224), Expect = 9e-19
Identities = 40/56 (71%), Positives = 45/56 (80%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 277
MGH ++SHP+ +GQGSRSCR SNRHG IRKYGLN CRQCF +YA DIGF KLD
Sbjct: 1 MGHQQLYWSHPQKFGQGSRSCRVYSNRHGRIRKYGLNKCRQCFHQYAKDIGFIKLD 56
>UniRef50_Q680P8 Cluster: 40S ribosomal protein S29; n=4;
Eukaryota|Rep: 40S ribosomal protein S29 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 56
Score = 92.3 bits (219), Expect = 3e-18
Identities = 38/54 (70%), Positives = 41/54 (75%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
MGH+N W SHP+ YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>UniRef50_A1DNZ6 Cluster: 40S ribosomal protein S29, putative; n=2;
Fungi/Metazoa group|Rep: 40S ribosomal protein S29,
putative - Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / NRRL 181)(Aspergillus fischerianus (strain ATCC
1020 / DSM 3700 / NRRL 181))
Length = 86
Score = 88.6 bits (210), Expect = 4e-17
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 274
M H + WYS PR +G+GSR CR C++R GLIRKYG++ICRQCFRE A DIGF K+
Sbjct: 1 MTHESVWYSRPRKFGKGSRECRVCAHRAGLIRKYGMDICRQCFREKAQDIGFYKV 55
>UniRef50_O74329 Cluster: 40S ribosomal protein S29; n=12; cellular
organisms|Rep: 40S ribosomal protein S29 -
Schizosaccharomyces pombe (Fission yeast)
Length = 56
Score = 85.8 bits (203), Expect = 3e-16
Identities = 37/54 (68%), Positives = 40/54 (74%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
M H N W+SHPR YG+GSR C R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>UniRef50_Q6CFB0 Cluster: Similar to sp|P41057 Saccharomyces
cerevisiae YLR388w YS29A ribosomal protein S29; n=1;
Yarrowia lipolytica|Rep: Similar to sp|P41057
Saccharomyces cerevisiae YLR388w YS29A ribosomal protein
S29 - Yarrowia lipolytica (Candida lipolytica)
Length = 78
Score = 84.2 bits (199), Expect = 9e-16
Identities = 34/54 (62%), Positives = 41/54 (75%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
M H N W+SHPR YG+G R CR +N++ +IRKYGLN+CRQ FRE A DIGF K
Sbjct: 23 MAHENIWFSHPRHYGKGGRKCRITNNQNAVIRKYGLNLCRQSFREKAADIGFTK 76
>UniRef50_Q1DQB3 Cluster: Predicted protein; n=4;
Pezizomycotina|Rep: Predicted protein - Coccidioides
immitis
Length = 123
Score = 82.2 bits (194), Expect = 4e-15
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
M H + +YS PR YG+GSR CR C+++ GLIRKYGL +CRQCFRE + DIGF K
Sbjct: 1 MTHESVFYSRPRNYGKGSRQCRVCAHKAGLIRKYGLLVCRQCFREKSQDIGFVK 54
>UniRef50_Q8INN0 Cluster: CG8495-PC, isoform C; n=1; Drosophila
melanogaster|Rep: CG8495-PC, isoform C - Drosophila
melanogaster (Fruit fly)
Length = 55
Score = 79.4 bits (187), Expect = 3e-14
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +2
Query: 173 RSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 277
R+CSNRHGLIRKYGLNICRQCFREYA+DIGFKKLD
Sbjct: 21 RACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 55
>UniRef50_Q4Q817 Cluster: Ribosomal protein s29, putative; n=5;
Trypanosomatidae|Rep: Ribosomal protein s29, putative -
Leishmania major
Length = 57
Score = 70.5 bits (165), Expect = 1e-11
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +2
Query: 110 MGHANXWYSHPRX-YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 274
MGH + W S + G+G+R C CSN+ LIRKY LN+CRQCFRE A IGF KL
Sbjct: 1 MGHLDQWRSRQKIGMGKGARCCVICSNQKALIRKYELNVCRQCFRENAEHIGFTKL 56
>UniRef50_P54110 Cluster: 30S ribosomal protein S14P; n=7;
Methanococcales|Rep: 30S ribosomal protein S14P -
Methanococcus jannaschii
Length = 53
Score = 69.3 bits (162), Expect = 3e-11
Identities = 30/46 (65%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +2
Query: 143 RXYGQGSRSCRSCSN-RHGLIRKYGLNICRQCFREYAHDIGFKKLD 277
+ YG G R C+ C + GLIRKYGLN+CRQCFRE AH +GFKKLD
Sbjct: 8 KKYGYGIRPCQRCGHVGPGLIRKYGLNLCRQCFREIAHKLGFKKLD 53
>UniRef50_UPI0001554864 Cluster: PREDICTED: similar to ribosomal
protein S29; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to ribosomal protein S29 -
Ornithorhynchus anatinus
Length = 168
Score = 67.7 bits (158), Expect = 9e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +2
Query: 173 RSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
R CSNRHGLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 85 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 117
>UniRef50_Q22MB0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 239
Score = 66.1 bits (154), Expect = 3e-10
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +2
Query: 128 WYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 274
W +HPR YG+ S+ CR C R GLI KY + CR+CFRE A IGF K+
Sbjct: 6 WRTHPRNYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPHIGFVKV 54
>UniRef50_O28368 Cluster: 30S ribosomal protein S14P; n=2; cellular
organisms|Rep: 30S ribosomal protein S14P -
Archaeoglobus fulgidus
Length = 51
Score = 65.3 bits (152), Expect = 5e-10
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2
Query: 143 RXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
+ +G+G+ CR C R GLIR YGL +CRQCFRE A ++GFKK
Sbjct: 7 KVFGRGANECRRCGRRRGLIRMYGLYLCRQCFREVASELGFKK 49
>UniRef50_Q013Q2 Cluster: RS29_CULQU 40S ribosomal protein S29; n=1;
Ostreococcus tauri|Rep: RS29_CULQU 40S ribosomal protein
S29 - Ostreococcus tauri
Length = 157
Score = 60.1 bits (139), Expect = 2e-08
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = +2
Query: 164 RSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
R R C N+ +IRKY LNICRQCFREYA DIGF+K
Sbjct: 120 RRSRVCENQWAIIRKYNLNICRQCFREYAKDIGFQK 155
Score = 34.3 bits (75), Expect = 0.98
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSR 166
MGH++ W SHP YG+GSR
Sbjct: 23 MGHSDVWASHPANYGKGSR 41
>UniRef50_Q8SS73 Cluster: 40S ribosomal protein S29; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S29
- Encephalitozoon cuniculi
Length = 55
Score = 60.1 bits (139), Expect = 2e-08
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = +2
Query: 131 YSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 277
+SH + +G+GSRSC SC G+IRK L +CR+CFREYA DIGF D
Sbjct: 9 HSHRKPFGKGSRSCVSCYTFRGIIRK--LMMCRRCFREYAGDIGFAIYD 55
>UniRef50_O05635 Cluster: 30S ribosomal protein S14P; n=11;
Thermoprotei|Rep: 30S ribosomal protein S14P -
Sulfolobus acidocaldarius
Length = 54
Score = 59.3 bits (137), Expect = 3e-08
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 143 RXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
R +G+G + C+ C +R +I+KYGL +CRQCFRE A+ +GF+K
Sbjct: 10 RRFGKGVQLCKRCGSRDSVIQKYGLYLCRQCFREVAYPMGFRK 52
>UniRef50_Q74NE6 Cluster: 30S ribosomal protein S14P; n=2;
Archaea|Rep: 30S ribosomal protein S14P - Nanoarchaeum
equitans
Length = 69
Score = 59.3 bits (137), Expect = 3e-08
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +2
Query: 143 RXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
R +G+G+R C C G+IR+YGL +C+ CF+E AH++GF K
Sbjct: 24 RKFGKGARRCERCGRYDGIIRRYGLYLCKDCFKEVAHELGFFK 66
>UniRef50_Q97BW2 Cluster: 30S ribosomal protein S14P; n=12;
Archaea|Rep: 30S ribosomal protein S14P - Thermoplasma
volcanium
Length = 53
Score = 53.6 bits (123), Expect = 1e-06
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 170 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
C C + G++RKYGL++CRQCFRE A +GF+K
Sbjct: 18 CVRCGRKRGIVRKYGLHLCRQCFRETARQLGFEK 51
>UniRef50_P62012 Cluster: 30S ribosomal protein S14P; n=10;
Archaea|Rep: 30S ribosomal protein S14P - Pyrococcus
abyssi
Length = 56
Score = 52.8 bits (121), Expect = 3e-06
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +2
Query: 140 PRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 277
PR +G+G+R C C +IR +GL +CR CFRE A +GF+K +
Sbjct: 11 PRKFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRKYE 56
>UniRef50_Q7R0P0 Cluster: GLP_79_44835_45248; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_44835_45248 - Giardia lamblia
ATCC 50803
Length = 137
Score = 51.6 bits (118), Expect = 6e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 164 RSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 274
R CR C N + + RKYGL ICR+CF+E A IGF KL
Sbjct: 100 RECRICGNYNSVYRKYGLFICRRCFKENAGKIGFVKL 136
>UniRef50_Q9HPC0 Cluster: 30S ribosomal protein S14P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S14P -
Halobacterium salinarium (Halobacterium halobium)
Length = 52
Score = 50.4 bits (115), Expect = 1e-05
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 161 SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
+ CR C GL+ KY + +CRQCFRE A +GFKK
Sbjct: 14 THECRRCGREQGLVGKYDIWLCRQCFREIARSMGFKK 50
>UniRef50_P26816 Cluster: 30S ribosomal protein S14P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S14P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 61
Score = 47.2 bits (107), Expect = 1e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 167 SCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
SC+ C GL+ KY + +CRQCFRE + +GF+K
Sbjct: 25 SCQRCGREQGLVGKYDIWLCRQCFREISRGMGFRK 59
>UniRef50_A2ZKX8 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 43.2 bits (97), Expect = 0.002
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSN 187
MGH+N W SHP+ YG GSR C CS+
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCFVCSS 26
>UniRef50_Q8XHT6 Cluster: 30S ribosomal protein S14 type Z; n=83;
Bacteria|Rep: 30S ribosomal protein S14 type Z -
Clostridium perfringens
Length = 61
Score = 39.5 bits (88), Expect = 0.026
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 128 WYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAH 253
W P+ + CR C H +++K+G ICR CFRE A+
Sbjct: 10 WKKEPKYKTRAYTRCRLCGRPHSVLKKFG--ICRICFRELAY 49
>UniRef50_UPI000023DF20 Cluster: hypothetical protein FG07181.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG07181.1 - Gibberella zeae PH-1
Length = 59
Score = 36.7 bits (81), Expect = 0.18
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 110 MGHANXWYSHPRXYGQGSRSCRS 178
M H + W S PR YG+GSRSC S
Sbjct: 1 MSHESVWNSRPRNYGKGSRSCAS 23
>UniRef50_Q7NEG5 Cluster: 30S ribosomal protein S14 type Z; n=3;
Bacteria|Rep: 30S ribosomal protein S14 type Z -
Gloeobacter violaceus
Length = 68
Score = 33.1 bits (72), Expect = 2.3
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 170 CRSCSNRHGLIRKYGLNICRQCFREYAH 253
C C G IR +GL CR CFRE AH
Sbjct: 31 CWRCGRPRGYIRDFGL--CRICFREMAH 56
>UniRef50_UPI0000F32986 Cluster: UPI0000F32986 related cluster; n=1;
Bos taurus|Rep: UPI0000F32986 UniRef100 entry - Bos
Taurus
Length = 54
Score = 31.9 bits (69), Expect = 5.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 137 HPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 274
H +G +R CR + + L+ + + +CR+C + +I F L
Sbjct: 8 HQALFGSQARGCRKVNTLYLLVPYFSITLCRRCCEQNNKNISFLML 53
>UniRef50_Q9GTH4 Cluster: Nuclear receptor NHR-43; n=3;
Caenorhabditis|Rep: Nuclear receptor NHR-43 -
Caenorhabditis elegans
Length = 459
Score = 31.5 bits (68), Expect = 6.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 134 SHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
S P + CR C R+ + +G++ICR C + + KK
Sbjct: 45 SSPTVADPSNIHCRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>UniRef50_Q3IPC2 Cluster: Predicted helicase; n=2;
Halobacteriaceae|Rep: Predicted helicase - Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678)
Length = 1767
Score = 31.5 bits (68), Expect = 6.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 140 PRXYGQGSRSCRSCSNRHGLIRK-YGLNICRQCFREY 247
P G CR+C+ H R Y L+ CR C +EY
Sbjct: 488 PHLSDAGDIECRTCAQEHDRTRTAYPLSFCRGCGQEY 524
>UniRef50_P95911 Cluster: Orf c01013 protein; n=1; Sulfolobus
solfataricus|Rep: Orf c01013 protein - Sulfolobus
solfataricus
Length = 156
Score = 31.5 bits (68), Expect = 6.9
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 46 SPSCXVS--LICCSLAXNNLIS*NGPRKXLVFSPSQXRTRISVMPILLQQAWLNPQVRFE 219
S SC S L+ C + N+LIS + P +++ PS+ + ILL+ ++ P F+
Sbjct: 40 SSSCTESSILLICLIGKNSLIS-SDPLAVILYLPSEVFSMTPSSSILLRSGYMEPGEGFQ 98
Query: 220 HMQTVL 237
+ +L
Sbjct: 99 NPHVIL 104
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,215,834
Number of Sequences: 1657284
Number of extensions: 4948308
Number of successful extensions: 10881
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 10672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10878
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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