Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F15
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    86   2e-18
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   3.5  
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    25   6.1  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 85.8 bits (203), Expect = 2e-18
 Identities = 37/54 (68%), Positives = 40/54 (74%)
 Frame = +2

Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
           M H N W+SHPR YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 12  WLFQLVVLSFKFAILXGVSNLLLVSAQQFNFLKWAT 119
           W ++ V L F  A++ G   LL+V++   N   W T
Sbjct: 802 WKYKTVCLVFAEAVIFGSHLLLVVASTDGNVAIWNT 837


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 151 RTRISVMPILLQQA-WLN--PQVRFEHMQTVLQRVCS*HRIQEAGL 279
           +T +S +  LL+ A  +N  PQ+RFEH +  L+RV   +  ++A L
Sbjct: 4   KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAML 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,445
Number of Sequences: 5004
Number of extensions: 20160
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)