Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F15
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   100   8e-22
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.25 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   0.25 
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    29   0.99 
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   2.3  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    27   7.0  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 99.5 bits (237), Expect = 8e-22
 Identities = 40/56 (71%), Positives = 46/56 (82%)
 Frame = +2

Query: 110 MGHANXWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 277
           MG  N W+SHPR +G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 134 SHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
           S P      +  CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 35  SSPTVADPSNIHCRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 134 SHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 271
           S P      +  CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 45  SSPTVADPSNIHCRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 169 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 270
           M I + + WL+P ++F+H+    Q +   H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 169 MPILLQQAWLNPQVRFEHMQTVLQRV 246
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 157 RISVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 258
           RI   P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 212 RTCGLSHACWSRIGMTEILVRXCEGEN 132
           R C ++H C+S +   E +   CEGEN
Sbjct: 40  RVCPVAH-CYSSLTAPEPMTSTCEGEN 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,692,197
Number of Sequences: 27780
Number of extensions: 118478
Number of successful extensions: 290
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)