Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F13
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...   186   3e-48
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.6  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   5.6  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   7.4  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   7.4  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   7.4  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   9.8  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score =  186 bits (453), Expect = 3e-48
 Identities = 99/214 (46%), Positives = 137/214 (64%), Gaps = 1/214 (0%)
 Frame = +3

Query: 144 QVRHLNVHXYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGK 323
           Q R+L +H YIS+ +LR  G+ VP+   A++ +EA K A +L   D+V+KAQVLAGGRGK
Sbjct: 19  QKRNLALHEYISHDILRKFGVDVPRGAPARSGEEAEKVARDLKVTDLVVKAQVLAGGRGK 78

Query: 324 GTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYY 503
           G F +GL+GGVR V     A   A +M+   L+T+QTG AG+ICN+V V ERKF R+EYY
Sbjct: 79  GQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTGPAGKICNVVYVCERKFIRKEYY 138

Query: 504 VAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGITDDQICRVIEKIGL 683
            AI+M+R    P+I+AS QGGV+IE VAAENP AI    +     +       +++K+G 
Sbjct: 139 FAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKRSLPNSPNLDPHIAEELVDKLGF 198

Query: 684 QEFA-TEAHGMIKKMYDLFLKKDALLIEVNPYAE 782
              +  +A   I K+Y +F   DA  +E+NP AE
Sbjct: 199 SSSSKPKAVDAIVKLYKVFNDCDATQVEINPLAE 232


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 394  AISPATSGVLTIRTPPLSPFLKVPFPRPPA 305
            +++PAT+   T+  P  S F  VP P PPA
Sbjct: 1508 SVAPATAPSSTL-PPSQSSFAHVPSPAPPA 1536


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 178 VILYYGTMEFLYPNLMWPKP 237
           V++ +GT EF+ P L W  P
Sbjct: 123 VVVQFGTTEFVSPPLKWESP 142


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 186  LLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAG 311
            +L D G+  PK+    + DEA KF   +    +V  + VL+G
Sbjct: 1135 MLDDIGVDQPKWKELTSFDEADKFCDTVGYPVLVRPSYVLSG 1176


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 792 SRHXRHTDLLQSIRHPS 742
           SRH ++TD++Q ++ PS
Sbjct: 677 SRHPKYTDIIQKLKKPS 693


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 189 LRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGTFKN 338
           L +  IP+ +     T DEA++ A E  +  +++++    GG G G   N
Sbjct: 215 LNEINIPIAESVAVSTVDEALQ-AAEKVSYPVIIRSAYSLGGLGSGFANN 263


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 819 LASKQKNVLSRHXRHTDLLQSIRHPS*GTNHTFF*SYHEL 700
           L S +K       R  D+L+S+ HP     H  F +  EL
Sbjct: 205 LTSSEKRATEMFQREIDILKSLHHPGVVQCHEIFENDDEL 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,478
Number of Sequences: 5004
Number of extensions: 68774
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)