Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_F13
(819 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 9e-25
SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 6e-24
SB_23802| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0) 36 0.039
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 31 1.5
SB_57025| Best HMM Match : Fascin (HMM E-Value=0) 31 1.5
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18) 30 2.6
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 111 bits (266), Expect = 9e-25
Identities = 72/172 (41%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Frame = +3
Query: 93 GNHLLPASSANKFPSKQQVRHLNVHXYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELN 272
G L N Q R+L+VH + S +L+D GI PK VA+T ++A + AT L
Sbjct: 20 GKLLARVLGPNVIAQHQPRRNLSVHEHHSMKILQDAGILTPKGGVARTAEQAYEIATVLG 79
Query: 273 TK----DIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGA 440
D+V+KAQVLAGGRGKG F+ GLKGGVR+V + + A ++A +M+ + L TKQTG
Sbjct: 80 ESEVEGDMVVKAQVLAGGRGKGKFEGGLKGGVRIVFSADEAKEVASRMIGKKLFTKQTGE 139
Query: 441 AGRICNMVMVTERKFPRREYYVAIMMERSFNG--PVIIASSQGGVNIEDVAA 590
GRICN V V F +A M +G P GG +IE V A
Sbjct: 140 LGRICNEVFV----FNGAGLAMATMDIIQLHGGEPANFLDIGGGASIEQVEA 187
>SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 108 bits (259), Expect = 6e-24
Identities = 54/115 (46%), Positives = 73/115 (63%)
Frame = +3
Query: 264 ELNTKDIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAA 443
+++ + V+KAQ+LAGGRGKGTF +GL GGV + + G KM L TKQT
Sbjct: 30 QVDAAEYVIKAQILAGGRGKGTFDSGLNGGVHLTKLADEVGYFTAKMFGYRLKTKQTPPE 89
Query: 444 GRICNMVMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAI 608
G + VMV E RE Y+AI+M+R F GPVI+AS +GG++IE+VA P+ I
Sbjct: 90 GVMVTRVMVAEAYDIERETYLAILMDREFMGPVIVASPKGGMDIEEVAKTTPEYI 144
>SB_23802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 35.9 bits (79), Expect = 0.039
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 699 EAHGMIKKMYDLFLKKDALLIEVNPYAEXAL 791
+A + +MYD+F+ +DA+L+E+NP +E L
Sbjct: 23 QAADWMMRMYDIFMSRDAVLLEINPMSEDLL 53
>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 229
Score = 35.9 bits (79), Expect = 0.039
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 714 IKKMYDLFLKKDALLIEVNPYAE 782
IK++YD+FLK DA +E+NP+ E
Sbjct: 5 IKRLYDVFLKVDATQVEINPFGE 27
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 477 RKFPRREYYVAIM-MERSFNGPVIIASSQGGVNIEDVAAENPD 602
R+F + E Y+A ERS+ P I+ +S G E+ + PD
Sbjct: 330 RRFEKSEPYMAWQGTERSYGSPAIVQASYGSTPYENENGQKPD 372
>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
Length = 504
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 388 SPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSL 236
S A + T PP L P+PR P TCA + + +V+ A SL
Sbjct: 162 SEAETATKTETPPPWLRLLPAPYPRTPTTTCALVPVGTINITVSENNARSL 212
>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
Length = 521
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -3
Query: 424 VTRS-CLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLI 248
VTRS C S FP +P+T V T + ++ RPPA+ + R + L++ A +
Sbjct: 201 VTRSDCCSAFPIRTPSTCSVCTWHSSNIA--------RPPAQPSSLRERTRTLATTATHM 252
Query: 247 ASSLVLATLNLGTG 206
S + L++ G
Sbjct: 253 MSYIACTKLHVKRG 266
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.5 bits (63), Expect = 3.4
Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Frame = -3
Query: 487 GNFLSVTMTMLQIRPAAPVCFVTRSCLSIFP--AISPATSGVLTIRTPPLS-PFLKVPFP 317
GNF S T ++ V S SI P I+ +T+ P S P+ P
Sbjct: 55 GNFTSATSVVVDSTTPNATRLVPSSSASISPNVTINMTREANITMILPSTSVPYNTTLIP 114
Query: 316 RPPARTCAFRTMSLVLSSVANL--IASSLVLATLNLGTGIPWSRSRV*LMYXCT 161
P A + A TMS S VAN+ + SS+ L +L T + S S L Y T
Sbjct: 115 APNATSTAATTMS--PSYVANMTTLDSSVSLTRSSLSTTLIPSISTSILPYNTT 166
>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +2
Query: 392 SRKDA*TTPSNKTNRGSRTNLQHGHGHREEVPTQGILRGNYDGTQFQWSSHHCFIS 559
SRK PS T R HG G +++P + I R N F SS CF S
Sbjct: 719 SRKRRLAVPSTPTKR-------HGSGRFKDLPPRKIRRDNSSHDSFSSSSSCCFSS 767
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,309,846
Number of Sequences: 59808
Number of extensions: 536410
Number of successful extensions: 1338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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